Hi Laura,
It seems that sometimes FIRST cannot segment some subcortical structures.
When it misses a corr file (Mostly ...Accu_corr), it means that you can not
merge all the 17 structures in a file. The last lines of run_first_all script file
deletes all the sub structures. I manually changed these lines. I merge all the
structures in a file by fslmerge command when run_first_all fails to do so. I use
only .._first files, not _corr files.
Siamak
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