Hi Lijuan,
Both Juergen Haenggi and Darren Gitelman kindly sent their updated versions
of aal and they both work with my set-up. As I am not authorised to
distribute these copies, please contact them directly.
Kind regards
Agnieszka
P.S.
Here are their contact emails: [log in to unmask] and
[log in to unmask]
Original Message:
-----------------
From: lijuan zou [log in to unmask]
Date: Mon, 17 Nov 2008 19:42:20 +0800
To: [log in to unmask]
Subject: Re: [SPM] SPM and Automated Anatomical Labeling (AAL) toolbox
hi,i have the same wrong information just now,using aal,how did you solve it
,can you send me a new version used on SPM5.thanks.
lijuan
2008/11/14 Agnes Reid <[log in to unmask]>
> Hello,
>
>
>
> I am just wondering whether anyone has successfully managed to run
> Automated Anatomical Labeling (AAL) toolbox for SPM2, using SMP5 in
Matlab?
>
> If, yes, I would be grateful for any information regarding problems and
> their solutions. Or perhaps, someone had the same problem as mine – please
> see below for details.
>
>
>
> I am using SMP5 with Matlab 7 for Windows and have installed the AAL
> toolbox for SPM2. The installation seemed to be successful and when
choosing
> 'aal' from the toolbox window, I can clearly see the menu with 'Toolbox:
> GIN, UMR 6095 (2003)' and its options.
>
>
>
> However, when I make my choice, e.g. 'Local Maxima Labelling' and chose my
> SPM.mat file (I am assuming that this is my SPM.mat file after I have
> specified my contrasts), the graphic window displays "Labels: volume
summary
> (labels and percentages per cluster)", but the window is empty, it also
> displays the correct directory for the SPM.mat file. The program seams to
> take ages which does not look promising, because when I run my contrast
> without using AAL, I only get a dozen of coordinates – so there is no much
> labelling to be done.
>
>
>
> I have checked Matlab Command Window and I get the following message given
> below.
>
>
>
> Thank you for your help,
>
>
>
> Agnieszka Reid, PhD
>
> University of Aston
>
>
>
>
>
> Message from the Matlab Command Window:
>
> "Initialising SPM.........done
>
>
>
> SPM present working directory:
>
> E:\Documents and Settings\Agnieska
>
> »
>
> ~ - SPM5: aal toolbox ---------------------------------------------
>
>
>
> Toolbox directory prepended to Matlab path:
>
> C:\SPM\spm5\toolbox\aal
>
>
>
> ----------------------------------------- 15:06:11 - 14/11/2008
>
>
>
>
>
> SPM5: spm_getSPM (v$Rev: 396 $) 15:06:17 -
> 14/11/2008
>
>
> ----------------------------------------------------------------
>
> SPM computation :
> ...initialising
>
> SPM computation :
> ...done
>
> SPM computation :
> ...done
>
> Warning: Unable to interpret TeX string
>
"\fMRIproperstudy\2ndlevelanalwithcovariates090908\onesamplettestCovariatesC
ontrols\procdata\CsPwordE\analyses\categorical".
>
> > In gin_list_dlabels at 153
>
> In gin_dlabels at 19
>
> Warning: The argument for the %s format specifier must be of type char (a
> string).
>
> > In gin_list_dlabels at 209
>
> In gin_dlabels at 19
>
> ??? Undefined function or variable "defaults".
>
>
>
> Error in ==> gin_list_dlabels at 322
>
> if defaults.analyze.flip
>
>
>
>
>
--
Lijuan Zou
key laboratory of Cognitive NeuroScience and Learning
BeiJing Normal University
BeiJing,China
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