I have also had this problem with the Linux dcm2nii where it has some bug
that messes up the headers. I ended up working around it by stripping the
orientation info from the header and reordering the data in canonical
orientation (by looking at the fiducial marker).
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Andreas Bartsch
Sent: Friday, November 07, 2008 11:16 AM
To: [log in to unmask]
Subject: [FSL] AW: [FSL] AW: [FSL] (unwanted) X swap when saving nii.gz
reconstructed from PAR/REC 4.1
hi leonardo,
i just checked on OSX (leopard). i can't replicate the issue either and am
getting radiological outputs.
strange. chris is probably the best to tell...
cheers-
andreas
-----Ursprüngliche Nachricht-----
Von: FSL - FMRIB's Software Library im Auftrag von Leonardo Cerliani
Gesendet: Fr 07.11.2008 17:07
An: [log in to unmask]
Betreff: Re: [FSL] AW: [FSL] (unwanted) X swap when saving nii.gz
reconstructed from PAR/REC 4.1
>you may also want to let Chris Rhorden know about it.
hi andreas,
I'll do it. As I said in the other reply, when converting under windows
there are no problems.
leonardo
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