Thanks Steve and Mark,
The problem is I've been using MRIcron's dcm2nii to convert from DICOM to
nifti, as recommended by the FSL site, and to reorient the niftis. I've been
using freesurfer's mri_convert to convert from .mgz to nifti. can you
recommend another program to do these conversions, since these errors occur
simply from conversion?
Laura
On Mon, 3 Nov 2008 20:01:26 +0000, Mark Jenkinson <[log in to unmask]> wrote:
>Hi,
>
>Just to add to this.
>The error message you are getting is very serious and cannot be
>fixed by correctheader. A large part of your image data is missing!
>This is far more than a header issue and indicates that dcm2nii
>has failed in this case.
>
>As Steve says, use fslswapdim to reorient your images instead.
>
>All the best,
> Mark
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