Hi,
The randomise_parallel script appends the original input command
line call with the smaller, fragmented number of permutations ( the -n
10000 is essentially ignored ).
Many Regards
Matt
> Hello,
>
> I am trying to use randomise_parallel, and I see that in the
> *.generate file, we get:
> sleep 15 ; /usr/local/fsl-4.1.0-1_64bit/bin/randomise -i [...dir...]/
> allfiles.nii.gz -o [...dir...] -d [...dir...]/allfiles.nii.gz.mat -t
> [...dir...]/allfiles.nii.gz.con -m [...dir...]/mask.nii.gz -T -n
> 10000 -n 333 -o [...dir...]/CvH_3DMI_SEED3 --seed=3
>
> The question I have is why are there two -n options? Is this ok?
> We initally specified 10000 permutations, and 333 of those
> permutations are being run on this node?
>
> Thanks for any help,
> Jason
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