Hi India,
Can you also copy your line command? (if you're using the GUI, the
line command pops up in your terminal when you press go).
Thanks,
Cherif
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Cherif P. Sahyoun HST-MEMP
Developmental Neuroimaging of Cognitive Functions
C: 617 688 8048
H: 617 424 6956
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"Live as if this were your last day. Learn as if you'll live forever"
Ghandi
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On Sat, Nov 22, 2008 at 1:55 AM, Matt Glasser <[log in to unmask]> wrote:
> What happens if you run it with just the seed mask?
>
> Peace,
>
> Matt.
>
> -----Original Message-----
> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
> Of India Bohanna
> Sent: Friday, November 21, 2008 10:39 PM
> To: [log in to unmask]
> Subject: [FSL] probtrackx empty fdt paths file
>
> Hi. I am running probtrackx and am getting an empty fdt_paths output file. I
> have checked
> the bvals and bvecs files are right (i.e. V1 follows the white matter
> paths), and the seed
> and target masks are correctly placed. I also re-ran bedpostx again, but
> this hasn't helped.
>
> Can anyone offer any clues as to why this might be happening?
> Thanks, India
>
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