What happens if you run it with just the seed mask?
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of India Bohanna
Sent: Friday, November 21, 2008 10:39 PM
To: [log in to unmask]
Subject: [FSL] probtrackx empty fdt paths file
Hi. I am running probtrackx and am getting an empty fdt_paths output file. I
have checked
the bvals and bvecs files are right (i.e. V1 follows the white matter
paths), and the seed
and target masks are correctly placed. I also re-ran bedpostx again, but
this hasn't helped.
Can anyone offer any clues as to why this might be happening?
Thanks, India
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