I'm running fsl 4.1.0 on a system with centos 5.1. Bet runs fine with the
simple options (such as -f or -g) but when trying to run it using -R -S or
-B (the only options I've checked) I get an error message (see below)
referring to the end of an if loop in the bet script.
All the best
Jonathan
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[]% bet SPGR45 SPGR45_betted -B
/software/system/fsl/fsl-4.1.0/bin/bet: line 383: 19390 Segmentation fault
${FSLDIR}/bin/fast -oba 100 ${OUT}_tmp_premask >&/dev/null
** ERROR (nifti_image_read): failed to find header file for
'SPGR_betted_tmp_premask_abias'
** ERROR: nifti_image_open(SPGR_betted_tmp_premask_abias): bad header info
Error: failed to open file SPGR_betted_tmp_premask_abias
ERROR: Could not open image SPGR_betted_tmp_premask_abias
Image Exception : #22 :: Failed to read volume SPGR_betted_tmp_premask_abias
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/software/system/fsl/fsl-4.1.0/bin/bet: line 383: 19396 Aborted
${FSLDIR}/bin/fslmaths $IN -mul ${OUT}_tmp_premask_abias
${OUT}_tmp_unbiasedInput image SPGR_betted_tmp_unbiased not valid
Error: input image SPGR_betted_tmp_unbiased_premask not valid
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