It was the max intensity that was displayed in FSLview.
Thanks for the suggestion of fslview <input> -R. I liked using the
fslview display since it didn't show the absolute max, but some percentile
max. To any FSL user interested, the command for this is:
fslview <input> -r.
When I check the paths using the above commands, I get results that are
much more appropriate.
Thanks Matt!
Conrad
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