Hi Wolf,
Thanks a lot I will try that program.
Best wishes!
Angelica
On Tue, 25 Nov 2008 15:18:42 +0100, wolf zinke <[log in to unmask]
BREMEN.DE> wrote:
>Hi,
>
>Sorry to link to a non-FSL program. If you want to overlay more than two
>stat images (solid or transparent) you might want to test mricron
>(http://www.sph.sc.edu/comd/rorden/mricron/). This program allows that
>and you can export selected slices as image file.
>
>hope this helps,
>wolf
>
>Angelica Hotiu wrote:
>> Hi,
>>
>> Thank you so much for your clarifications.I know that using Add function in
>> FSLview I can overlay as many images as I want but my main concern is
how I
>> can save the resultant image (resulted from overlay 3 stats images) and
than
>> using slicer to get the picture of this image. I need for publication
>> pictures with 3 stats images.I was trying in the past to save the image
>> which result after overlay but I didn't get the desired image (it shows just
>> one). Did I miss something?I'm so sorry for this basic question.
>> Thanks again for your time.
>> Best Regards,
>>
>> Angelica
>>
>>
>>
>>
>>
>> On Tue, 25 Nov 2008 07:57:46 +0000, Steve Smith
<[log in to unmask]> wrote:
>>
>>
>>> Hi,
>>>
>>> Renderstats is just a GUI for "overlay", and I'm afraid that both are
>>> limited to only to stats images. The only easy way to overlay more
>>> than that is using FSLView, in which you can easily overlay as many
>>> stats images as you like and setup their colourmaps (the obvious
>>> downside being that this isn't scriptable, sorry!).
>>>
>>> Not sure about the FSLView library problem - Dave, could you advise?
>>>
>>> Cheers, Steve.
>>>
>>>
>>>
>>> On 23 Nov 2008, at 20:43, Angelica Hotiu wrote:
>>>
>>>
>>>> Dear FSL experts,
>>>>
>>>> I'm trying to obtain the images from the TBSS results
>>>> (congratulations to
>>>> developers for this tremendous work) and I have 3 basic questions:
>>>>
>>>> 1) I' m wondering how I can display 3 statistic images over a
>>>> background
>>>> image using overlay utility (or something else ?) and how I can set
>>>> the lut
>>>> for each image. I know that overlay can display 2 stat images over the
>>>> background image and doesn't allow to set the color for the stats
>>>> images.Is
>>>> it something that has all this capabilities?
>>>> 2) Also I used Renderstats for displaying 2 stat images over a
>>>> background
>>>> and did the job nicely. I'm wondering if it is possible to change
>>>> the
>>>> color map for each statistic image and how? (for example the first
>>>> stat
>>>> image has the color map Red-Yellow to change it to Green and for 2nd
>>>> stat
>>>> image from Blue-Light Blue to change it to Red).
>>>> 3) I was trying to use 3D viewer (fsl window is closed automaticaly)
>>>> and I
>>>> get this message error
>>>>
>>>> fslview_bin: main/context.c:1266: _mesa_initialize_context: Assertion
>>>> `driverFunctions->NewTextureObject' failed.
>>>> /usr/local/fsl/bin/fslview: line 6: 4400 Aborted
>>>> ${FSLDIR}/bin/fslview_bin $@
>>>>
>>>> Any suggestions will be greatly appreciated.
>>>> Many thanks in advance.
>>>> Best Regards,
>>>>
>>>> Angelica
>>>>
>>>>
>>>>
>>>>
>>> -----------------------------------------------------------------------
----
>>> Stephen M. Smith, Professor of Biomedical Engineering
>>> Associate Director, Oxford University FMRIB Centre
>>>
>>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>>> +44 (0) 1865 222726 (fax 222717)
>>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>>> -----------------------------------------------------------------------
----
>>>
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