Hi - I guess dcm2nii isn't an FSL program? Sounds like it's not
creating legal NIFTI files. You can just reorient images with the FSL
program fslswapdim
Cheers.
On 3 Nov 2008, at 18:42, Laura deSouza wrote:
> Hi All,
>
> I had a bunch of .nii format data that I needed reoriented, and I used
> dcm2nii. The data had run fine through slicesdir when I checked it
> originally, but post-reorientation I get errors. I'm running through
> the
> rest of the analysis anyway, and it seems not to interfere. Here's
> the error
> message I get:
>
> odys0162
> ++ WARNING: nifti_read_buffer (odys0162.nii.gz):
> data bytes needed = 23068672
> data bytes input = 21756486
> number missing = 1312186 (set to 0)
>
> except that it appears for several of my files. I've seen a solution
> that
> says to run correctheader on these files. Would that work in this
> case?
>
> Thanks!
> Laura
>
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