Thank you for all the suggestions!
In case this is helpful to anyone else, what seems most useful for
multi-domain proteins aside from TOPS ( http://www.tops.leeds.ac.uk/ which
is down currently) is a ccp4 program topdraw.
(http://stein.bioch.dundee.ac.uk/~charlie/software/topdraw/)
Charu
On 11/10/08 1:55 PM, "Santarsiero, Bernard D." <[log in to unmask]> wrote:
> PDBSum is the easiest to use for this, and some other useful information:
>
> http://www.ebi.ac.uk/pdbsum/
>
> Bernie
>
> On Mon, November 10, 2008 12:34 pm, hari jayaram wrote:
>> Hi CharuEspript is an excellent resource for this
>> It is particulary useful when you want a secondary structure schematic
>> with
>> an alignment and other information relevant to the structure .. .It has a
>> friendly web interface at
>> http://espript.ibcp.fr/ESPript/ESPript/
>>
>> Fr eg
>> http://espript.ibcp.fr/ESPript/ESPript/images/vp7.gif
>>
>> Hope this Helps
>> Hari Jayaram
>>
>>
>> On Mon, Nov 10, 2008 at 1:53 PM, Charu Chaudhry
>> <[log in to unmask]>wrote:
>>
>>> Hello,
>>> Does anyone know of a program that can automatically generate a folding
>>> pattern schematic diagram showing the arrangement of secondary structure
>>> elements for a protein ? Presumably one would have to feed it a PDB file
>>> with secondary structure assigned from DSSP.
>>> Thanks!
>>> Charu
>>> Mayer lab/NIH
>>>
>>
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