JiscMail Logo
Email discussion lists for the UK Education and Research communities

Help for LCG-ROLLOUT Archives


LCG-ROLLOUT Archives

LCG-ROLLOUT Archives


LCG-ROLLOUT@JISCMAIL.AC.UK


View:

Message:

[

First

|

Previous

|

Next

|

Last

]

By Topic:

[

First

|

Previous

|

Next

|

Last

]

By Author:

[

First

|

Previous

|

Next

|

Last

]

Font:

Proportional Font

LISTSERV Archives

LISTSERV Archives

LCG-ROLLOUT Home

LCG-ROLLOUT Home

LCG-ROLLOUT  October 2008

LCG-ROLLOUT October 2008

Options

Subscribe or Unsubscribe

Subscribe or Unsubscribe

Log In

Log In

Get Password

Get Password

Subject:

Kernel versions and bdii problem

From:

Gonçalo Borges <[log in to unmask]>

Reply-To:

LHC Computer Grid - Rollout <[log in to unmask]>

Date:

Tue, 28 Oct 2008 19:10:42 +0000

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (89 lines)

Dear All...

This is just an email for your knowledge (and for my future reference :) 
) regarding a problem I had after installing one of the last glite 
updates in one of my CEs.

The ldap server was not able to start. An "lsof -n | grep IPv4" showed 
that bdii-fwd was listening on port 2170 but slapd processes were not 
listening on ports 2171 and 2172.

Trying to run the slapd daemon manually with the proper debug bit mask I 
got:

---*---

[root@i2g-ce01 log]# /usr/sbin/slapd -d 2048 -f 
/opt/bdii/var/2172/bdii-slapd.conf -h ldap://localhost:2172 -u edguser
@(#) $OpenLDAP: slapd 2.2.13 (Nov 15 2007 12:10:40) $
   
 [log in to unmask]:/mnt/src/4/BUILD/openldap-2.2.13/openldap-2.2.13/build-servers/servers/slapd
bdb_initialize: Sleepycat Software: Berkeley DB 4.2.52: (December  3, 2003)
bdb_initialize: Sleepycat Software: Berkeley DB 4.2.52: (December  3, 2003)
/opt/bdii/var/2172/bdii-slapd.conf: line 11: schema checking disabled! 
your mileage may vary!
bdb_db_init: Initializing BDB database
bdb_db_init: Initializing BDB database
bdb(o=infosys): mmap: Cannot allocate memory
bdb_db_open: dbenv_open failed: Cannot allocate memory (12)
backend_startup: bi_db_open(1) failed! (12)
bdb(o=infosys): DB_ENV->lock_id_free interface requires an environment 
configured for the locking subsystem
bdb(o=infosys): txn_checkpoint interface requires an environment 
configured for the transaction subsystem
bdb_db_destroy: txn_checkpoint failed: Invalid argument (22)
slapd stopped.
connections_destroy: nothing to destroy.

---*---

I realized that this was a problem in allocating memory. Doing a strace 
to previous command "strace -f /usr/sbin/slapd -d 2048 -f 
/opt/bdii/var/2172/bdii-slapd.conf -h ldap://localhost:2172 -u edguser > 
/tmp/xxxx 2>&1" I saw that the problematic part was

---*---

(...)
stat64("/opt/bdii/var/2172/infosys/__db.002", {st_mode=S_IFREG|0600, 
st_size=1073741824, ...}) = 0
open("/opt/bdii/var/2172/infosys/__db.002", O_RDWR|O_CREAT|O_LARGEFILE, 
0600) = 9
fcntl64(9, F_SETFD, FD_CLOEXEC)         = 0
mmap2(NULL, 1073741824, PROT_READ|PROT_WRITE, MAP_SHARED, 9, 0) = -1 
ENOMEM (Cannot allocate memory)
write(2, "bdb(o=infosys): mmap: Cannot all"..., 45bdb(o=infosys): mmap: 
Cannot allocate memory) = 45
close(9)                                = 0
(...)

---*---

It seems there was a problem uploading to memory the 
/opt/bdii/var/2172/infosys/__db.002 db which has 1G (so high????). 
Comparing with my other CEs which were OK, the only difference between 
the machines was that they were using different kernels. The "good" CEs 
were the ones using the std SL kernel (2.6.9-78.0.1.ELsmp). My 
problematic CE was one of the last versions downloaded from kernel.org 
and compiled by myself. Therefore, I recompiled my kernel with the 
definitions of the std SL kernel (config-2.6.9-78.0.1.ELsmp)

After that, slapd daemons started correctly:

---*---
root@i2g-ce01 ~]# ps xua | grep slapd
edguser   4115  6.4  0.1 2124000 3448 ?      Ssl  19:05   0:04 
/usr/sbin/slapd -f /opt/bdii/var/2171/bdii-slapd.conf -h 
ldap://localhost:2171 -u edguser
edguser   4302  0.0  0.1 2123868 3204 ?      Ssl  19:06   0:00 
/usr/sbin/slapd -f /opt/bdii/var/2172/bdii-slapd.conf -h 
ldap://localhost:2172 -u edguser
root      4312  0.0  0.0  3732  620 pts/0    R+   19:06   0:00 grep slapd
---*---

So, it seems people using non standard kernels have to be aware of the 
parameters they pass to compile the kernel...

Cheers
Goncalo

Top of Message | Previous Page | Permalink

JiscMail Tools


RSS Feeds and Sharing


Advanced Options


Archives

March 2024
November 2023
June 2023
May 2023
April 2023
March 2023
February 2023
September 2022
June 2022
May 2022
April 2022
February 2022
December 2021
November 2021
October 2021
September 2021
July 2021
June 2021
May 2021
February 2021
January 2021
November 2020
September 2020
August 2020
July 2020
June 2020
May 2020
April 2020
March 2020
February 2020
January 2020
November 2019
October 2019
September 2019
August 2019
July 2019
June 2019
May 2019
March 2019
February 2019
January 2019
December 2018
November 2018
October 2018
September 2018
August 2018
July 2018
June 2018
May 2018
April 2018
February 2018
January 2018
November 2017
October 2017
September 2017
July 2017
June 2017
May 2017
March 2017
February 2017
January 2017
December 2016
November 2016
October 2016
September 2016
August 2016
July 2016
June 2016
May 2016
April 2016
March 2016
February 2016
January 2016
December 2015
November 2015
October 2015
September 2015
August 2015
July 2015
June 2015
May 2015
April 2015
March 2015
February 2015
January 2015
December 2014
November 2014
October 2014
September 2014
August 2014
July 2014
June 2014
May 2014
April 2014
March 2014
February 2014
January 2014
December 2013
November 2013
October 2013
September 2013
August 2013
July 2013
June 2013
May 2013
April 2013
March 2013
February 2013
January 2013
December 2012
November 2012
October 2012
September 2012
August 2012
July 2012
June 2012
May 2012
April 2012
March 2012
February 2012
January 2012
December 2011
November 2011
October 2011
September 2011
August 2011
July 2011
June 2011
May 2011
April 2011
March 2011
February 2011
January 2011
December 2010
November 2010
October 2010
September 2010
August 2010
July 2010
June 2010
May 2010
April 2010
March 2010
February 2010
January 2010
December 2009
November 2009
October 2009
September 2009
August 2009
July 2009
June 2009
May 2009
April 2009
March 2009
February 2009
January 2009
December 2008
November 2008
October 2008
September 2008
August 2008
July 2008
June 2008
May 2008
April 2008
March 2008
February 2008
January 2008
December 2007
November 2007
October 2007
September 2007
August 2007
July 2007
June 2007
May 2007
April 2007
March 2007
February 2007
January 2007
2006
2005
2004
2003


JiscMail is a Jisc service.

View our service policies at https://www.jiscmail.ac.uk/policyandsecurity/ and Jisc's privacy policy at https://www.jisc.ac.uk/website/privacy-notice

For help and support help@jisc.ac.uk

Secured by F-Secure Anti-Virus CataList Email List Search Powered by the LISTSERV Email List Manager