Hi Markus,
I've tried what you suggested and here is the output, its strange though
because it says that the bvals and bvecs don't exist when they are in the
correct folder - maybe this suggests that they are incorrect?
data
data_type INT16
dim1 236
dim2 236
dim3 11
dim4 7
datatype 4
pixdim1 0.7031250000
pixdim2 0.7031250000
pixdim3 4.0000000000
pixdim4 1.0000000000
cal_max 0.0000
cal_min 0.0000
file_type NIFTI-1+
/Users/Jen/Desktop/DTI/FSL_2/for_DTIFIT//nodif_brain_mask
data_type FLOAT32
dim1 236
dim2 236
dim3 11
dim4 1
datatype 16
pixdim1 0.7031250000
pixdim2 0.7031250000
pixdim3 4.0000000000
pixdim4 1.0000000000
cal_max 0.0000
cal_min 0.0000
file_type NIFTI-1+
num lines in /Users/Jen/Desktop/DTI/FSL_2/for_DTIFIT//bvals
cat: /Users/Jen/Desktop/DTI/FSL_2/for_DTIFIT//bvals: No such file or directory
0
num words in /Users/Jen/Desktop/DTI/FSL_2/for_DTIFIT//bvals
cat: /Users/Jen/Desktop/DTI/FSL_2/for_DTIFIT//bvals: No such file or directory
0
num lines in /Users/Jen/Desktop/DTI/FSL_2/for_DTIFIT//bvecs
cat: /Users/Jen/Desktop/DTI/CN139194/DTI/FSL_2/for_DTIFIT//bvecs: No such
file or directory
0
num words in /Users/Jen/Desktop/DTI/FSL_2/for_DTIFIT//bvecs
cat: /Users/Jen/Desktop/DTI/FSL_2/for_DTIFIT//bvecs: No such file or directory
0
cat: /Users/Jen/Desktop/DTI/FSL_2/for_DTIFIT//bvals: No such file or directory
cat: /Users/Jen/Desktop/DTI/FSL_2/for_DTIFIT//bvals: No such file or directory
Runtime error (func=(main), adr=3): Divide by zero
cat: /Users/Jen/Desktop/DTI/FSL_2/for_DTIFIT//bvecs: No such file or directory
cat: /Users/Jen/Desktop/DTIFSL_2/for_DTIFIT//bvecs: No such file or directory
Runtime error (func=(main), adr=3): Divide by zero
/Users/Jen/fsl/bin/bedpostx_datacheck: line 51: [: too many arguments
/Users/Jen/fsl/bin/bedpostx_datacheck: line 55: [: too many arguments
/Users/Jen/fsl/bin/bedpostx_datacheck: line 59: [: too many arguments
number of elements in bvals is not equal to number of vols in data
/Users/Jen/fsl/bin/bedpostx_datacheck: line 67: [: too many arguments
Thanks again for your help!
Jen
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