5000 refers to the number of samples used for tractography (the -P option in
probtrackx).
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Michael Scheel
Sent: Tuesday, October 14, 2008 8:23 PM
To: [log in to unmask]
Subject: [FSL] Bedpost Option Burnin vs total number of samples generated
Hi,
i have a short question regarding FDT and number-of-sampling / Burnin-
Option. I just read the Bridge 2008 paper "Changes in connectivity
after visual cortical brain damage underlie altered visual function"
and was wondering if the total-number-of-samples-generated mentioned
(5000 in this paper) is equivalent to the Burnin option (default 1000)
in BedpostX or if these are different things.
Second question: could someone point me to a tool doing a 3d-tract
visualization similar to the one in this paper.
Thanks, Michael
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