Merci beacoup !!!
Thank you VERY much, your fix works. The normalization result looks
much better then the old one - the only problem remains with the
"perifery" - namely parts of frontal cortex and the area below
mesencephalon. I am reruning the analysis with -n option as my
patients/controls are bit older and may in average have e.g. larger
ventricules then "standard brain". But again, the core works which is
essential right now. So again great THANKS to you, Gwenaëlle
(unfortunately there is no way to attach some flowers to this mail).
George
2008/9/10 Gwenaëlle DOUAUD <[log in to unmask]>:
> Not tested... But give it try!
>
> Gwenaelle
>
>
> --- En date de : Mer 10.9.08, Jiří Keller, M.D. <[log in to unmask]> a écrit :
>
>> De: Jiří Keller, M.D. <[log in to unmask]>
>> Objet: Re: [FSL] Re : [FSL] Re : [FSL] tbss_3_postreg problem in new FSL version
>> À: [log in to unmask]
>> Date: Mercredi 10 Septembre 2008, 16h55
>> Hi,
>> see the attachement ... it was the result of
>>
>> cat $(which tbss_3_postred)|sed -e
>> s/"imglob"/"remove_ext"/g>tbss3fix;chmod
>> +x tbss3fix
>>
>> (the version included in this mail is one I used)
>>
>> thanks
>> George
>> 2008/9/10 Gwenaëlle DOUAUD
>> <[log in to unmask]>:
>> > Hi George,
>> >
>> > could you please send me your modified tbss_3_postreg
>> script? I'll have a look...
>> >
>> > Cheers,
>> > Gwenaelle
>> >
>> >
>> > --- En date de : Mer 10.9.08, Jiří Keller, M.D.
>> <[log in to unmask]> a écrit :
>> >
>> >> De: Jiří Keller, M.D.
>> <[log in to unmask]>
>> >> Objet: [FSL] Re : [FSL] tbss_3_postreg problem in
>> new FSL version
>> >> À: [log in to unmask]
>> >> Date: Mercredi 10 Septembre 2008, 10h53
>> >> Good morning Gwenaëlle,
>> >> i have modified the third script as well and ran
>> the
>> >> analysis. The
>> >> good point is reduced size of error messages, the
>> bad point
>> >> is still
>> >> empty stats directory :-(.
>> >>
>> >> log generated by tbss_1 looks reasonable,
>> >> tbss_2 generates no error messages
>> >> everything else is included in tgz ...
>> >>
>> >> So - any idea ?
>> >> thanks
>> >> George
>> >
>> >
>> >
>> >
>
>
>
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