Your question just reminded me of this little tool that is nice to have.
Now this script does not really do what you ask but someone might need a
script for extracting basic secondary structure info from dssp format to
the pdb format. If anyone has something better, please share.
Take a look at James Strouts script:
http://structure.usc.edu/dssp2pdb/
Sorry again for the a bit off topic replay.
Djordje
> Dear all,
> some proteins have complicate beta-sheet structures
> (closed sheet,bifurcated sheets ...). Its easy
> to determine the strands and sheets with DSSP, HERA ...
> but PDB's automatical tool makes numerous mistakes and it takes more
time
> to correct the pre-deposition file than to sent the correct one. My
question is: Is there a program available which can
> do the boring work of registration determination (columns 39-70 in the
beta-sheet cards)?
> Thanks in advance,
> Jürgen
>
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