You can use the ancient but useful watertidy script - that assigns water
names coded according to the residue they are linked to. So ones with
the same link code are related..
But I also use distang.
Make a file with the two or more sets of waters - then do a distance
search with the appropriate water radius.
Eleanor
Thus Tim Gruene wrote:
> Hello,
>
> I am (lazily ;-)) looking for a program that list all conserved waters
> between to structures (after superposition), i.e. all waters between
> both structures within a certain distance cut-off.
>
> Could anyone please point me to a program that does this?
>
> Thanks a lot, Tim
>
> --
> Tim Gruene
> Institut fuer anorganische Chemie
> Tammannstr. 4
> D-37077 Goettingen
>
> GPG Key ID = A46BEE1A
>
>
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