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STARLINK  September 2008

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Subject:

Re: emission line fitting in Splat

From:

"Matthijs H.D. van der Wiel" <[log in to unmask]>

Reply-To:

Starlink Software User Support <[log in to unmask]>

Date:

Mon, 8 Sep 2008 11:46:46 +0200

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (187 lines)

Hi,

On Mon, Sep 8, 2008 at 11:05 AM, Peter W. Draper
<[log in to unmask]> wrote:
>
> For the standalone release you'll need to put these in the lib/i386
> directory of that, not of the full release.
>

This is what I thought I did yesterday. I probably did something wrong
then, because upon trying again:

tar -xzvf starjava_jni_intel_leopard.tar.gz
mv *.jnilib /Applications/splat-vo/lib/i386/
open /Applications/splat-vo/lib/splat.jnlp

it works perfectly now, including error estimates on fitted line
parameters! That's a happy start to the new week.

> (since the standard SPLAT already works I'd guess you've already applied
> this patch to it).
>

I did indeed, somewhere last March.

Thanks for your efforts.

Cheers,
Matthijs



>> Please let us know how this works for you.
>>
>> Cheers,
>>   Brad.
>>
>> On Sep 5, 2008, at 1:05 PM, Matthijs H.D. van der Wiel wrote:
>>
>> > I use Mac OS X 10.5.4 (Leopard) on an Intel MacBook.
>> >
>> > Not sure about the glibc version. I can find the following files in /
>> > sw:
>> > /sw/share/aclocal/glibc2.m4
>> > /sw/share/aclocal/glibc21.m4
>> > (but I don't know if that is of any informative value.)
>> >
>> > Note that it is only the new SPLAT-VO (from
>> > http://astro.dur.ac.uk/~pdraper/splat/splat-vo/ ) that is unable to
>> > open NDF files. The one from the Humu release of Starlink works
>> > perfectly.
>> >
>> >
>> > -
>> > Matthijs
>> >
>> >
>> > On Fri, Sep 5, 2008 at 8:53 PM, Tim Jenness <[log in to unmask]>
>> > wrote:
>> >> What operating system are you using? (include glibc version on
>> >> linux) I
>> >> wonder if the NDF library embedded in SPLAT is not binary
>> >> compatible with
>> >> your OS so it can't read NDF.
>> >> Tim
>> >>
>> >> On Thu, Sep 4, 2008 at 9:58 PM, Matthijs H.D. van der Wiel
>> >> <[log in to unmask]> wrote:
>> >>>
>> >>> Hi Peter,
>> >>>
>> >>> On Thu, Sep 4, 2008 at 4:36 PM, Peter W. Draper <[log in to unmask]
>> >>> >
>> >>> wrote:
>> >>>>
>> >>>> I've added error estimates for the Gaussian, Lorentzian and Voigt
>> >>>> profile
>> >>>> parameters. This will be part of the next release, or you can
>> >>>> download a
>> >>>> version from the SPLAT-VO page:
>> >>>>
>> >>>> http://astro.dur.ac.uk/~pdraper/splat/splat-vo
>> >>>>
>> >>>
>> >>> That's great! I would much rather use Splat for line fitting than
>> >>> having to go to e.g. Dipso (which is what I'm currently doing) or a
>> >>> completely different package. As soon as I get Splat to fit my lines
>> >>> and give errors estimates on the fitted parameters, I am switching
>> >>> back to Splat for sure.
>> >>>
>> >>> I just downloaded Splat-VO and installed it on my Intel Mac (OS X
>> >>> 10.5.4). Sadly, I am unable to load my spectra.
>> >>>
>> >>> After installation, I have done the following:
>> >>> 1. double-clicked on /Applications/splat-vo/lib/splat.jnlp to
>> >>> start the
>> >>> program
>> >>> 2. clicked on 'file' --> 'open', selected the .sdf containing my
>> >>> spectrum and selected 'open'
>> >>> 3. Splat-VO then returns the following error:
>> >>> "
>> >>> uk.ac.starlink.splat.util.SplatException: Spectrum
>> >>> '/Users/MHD/data/SLS/highfreqdata/dataproducts/
>> >>> central4avspec_2500ms.sdf'
>> >>> has an unkown type, format or name syntax(guessed: NDF)
>> >>>   at
>> >>> uk
>> >>> .ac
>> >>> .starlink
>> >>> .splat.data.SpecDataFactory.throwReport(SpecDataFactory.java:546)
>> >>>   at
>> >>> uk.ac.starlink.splat.data.SpecDataFactory.get(SpecDataFactory.java:
>> >>> 347)
>> >>>   at
>> >>> uk.ac.starlink.splat.data.SpecDataFactory.get(SpecDataFactory.java:
>> >>> 222)
>> >>>   at
>> >>> uk
>> >>> .ac
>> >>> .starlink
>> >>> .splat.iface.SplatBrowser.tryAddSpectrum(SplatBrowser.java:1933)
>> >>>   at
>> >>> uk.ac.starlink.splat.iface.SpectrumIO.addSpectra(SpectrumIO.java:
>> >>> 312)
>> >>>   at uk.ac.starlink.splat.iface.SpectrumIO$2.run(SpectrumIO.java:
>> >>> 261)
>> >>> "
>> >>> (I typed in all the above by hand, since I can't figure out how to
>> >>> copy text from Splat's error message.)
>> >>>
>> >>> I get the same error message if I use the "webstart application"
>> >>> which
>> >>> is linked on http://astro.dur.ac.uk/~pdraper/splat/splat-vo/ .
>> >>>
>> >>> The older Splat version that was already installed on my computer
>> >>> (the
>> >>> one that came with Humu-starlink release) is still there, can
>> >>> still be
>> >>> run, and is still able to open my spectra.
>> >>>
>> >>> What could be going wrong here?
>> >>>
>> >>>
>> >>> Thank you for your help.
>> >>>
>> >>> Cheers,
>> >>> Matthijs
>> >>>
>> >>>
>> >>> --
>> >>> M.H.D. van der Wiel
>> >>> Kapteyn Astronomical Institute, University of Groningen
>> >>> & SRON Netherlands Institute for Space Research
>> >>> e-mail: [log in to unmask]
>> >>> homepage: http://www.astro.rug.nl/~wiel/
>> >>> room: ZG 183 [Landleven 12]
>> >>> tel: +31 (0)50 363 4083
>> >>
>> >>
>> >
>> >
>> >
>> > --
>> > M.H.D. van der Wiel
>> > Kapteyn Astronomical Institute, University of Groningen
>> > & SRON Netherlands Institute for Space Research
>> > e-mail: [log in to unmask]
>> > homepage: http://www.astro.rug.nl/~wiel/
>> > room: ZG 183 [Landleven 12]
>> > tel: +31 (0)50 363 4083
>>
>
> --
> Peter W. Draper, http://astro.dur.ac.uk/~pdraper
>



-- 
M.H.D. van der Wiel
Kapteyn Astronomical Institute, University of Groningen
& SRON Netherlands Institute for Space Research
e-mail: [log in to unmask]
homepage: http://www.astro.rug.nl/~wiel/
room: ZG 183 [Landleven 12]
tel: +31 (0)50 363 4083

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