Hi,
so, what happens if you type directly:
imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg 070987_dti_FA_FA target 070987_dti_FA_FA_to_target -e -FA
in your shell?
For few minutes you should see flirt running when doing a "top", and afterwards, something like that in your shell:
Setting subsampling
Setting reg mode
Setting lambda
Cheers,
Gwenaelle
--- En date de : Mar 16.9.08, Eleftherios Garyfallidis <[log in to unmask]> a écrit :
> De: Eleftherios Garyfallidis <[log in to unmask]>
> Objet: Re: [FSL] Re : [FSL] tbss_3_postreg problem fix not working
> À: [log in to unmask]
> Date: Mardi 16 Septembre 2008, 19h50
> Hi,
>
> This is the output of
> less FA/.commands
>
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 070987_dti_FA_FA target
> 070987_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 070988_dti_FA_FA target
> 070988_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 070990_dti_FA_FA target
> 070990_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 070991_dti_FA_FA target
> 070991_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 070992_dti_FA_FA target
> 070992_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 070993_dti_FA_FA target
> 070993_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 070995_dti_FA_FA target
> 070995_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 070997_dti_FA_FA target
> 070997_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 071008_dti_FA_FA target
> 071008_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 071009_dti_FA_FA target
> 071009_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 071010_dti_FA_FA target
> 071010_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 071013_dti_FA_FA target
> 071013_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 071014_dti_FA_FA target
> 071014_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 071015_dti_FA_FA target
> 071015_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 071018_dti_FA_FA target
> 071018_dti_FA_FA_to_target -e -FA
> /imaging/local/linux/bin/fsl-4.1.0/bin/fsl_reg
> 071019_dti_FA_FA target
> 071019_dti_FA_FA_to_target -e -FA
>
> Best,
> Eleftherios
>
> Gwenaëlle DOUAUD wrote:
> > Hi,
> >
> > no problem. This is in your FA directory (ls -al to be
> able to see it)...
> >
> > Thanks,
> > Gwenaelle
> >
> >
> > --- En date de : Mar 16.9.08, Eleftherios Garyfallidis
> <[log in to unmask]> a écrit
> :
> >
> >
> >> De: Eleftherios Garyfallidis
> <[log in to unmask]>
> >> Objet: Re: [FSL] Re : [FSL] tbss_3_postreg problem
> fix not working
> >> À: [log in to unmask]
> >> Date: Mardi 16 Septembre 2008, 17h46
> >> Hi Gwenaelle,
> >>
> >> Unfortunately, we don't have SGE installed in
> our lab
> >> and forgive me I
> >> forgot to mention in the previous e-mail that I
> cannot find
> >> the
> >> .commands file. Where this file should be?
> >>
> >> Cheers,
> >> Eleftherios
> >>
> >>
> >>
> >> Gwenaëlle DOUAUD wrote:
> >>
> >>> Hi Eleftherios,
> >>>
> >>> have you got a SGE system installed in your
> lab? If
> >>>
> >> so, the jobs have been sent to your cluster and
> are either
> >> queueing or running now... Could you also please
> attach the
> >> .commands file?
> >>
> >>> Cheers,
> >>> Gwenaelle
> >>>
> >>>
> >>> --- En date de : Mar 16.9.08, Eleftherios
> Garyfallidis
> >>>
> >> <[log in to unmask]>
> a écrit
> >> :
> >>
> >>>
> >>>
> >>>> De: Eleftherios Garyfallidis
> >>>>
> >> <[log in to unmask]>
> >>
> >>>> Objet: Re: [FSL] Re : [FSL] tbss_3_postreg
> problem
> >>>>
> >> fix not working
> >>
> >>>> À: [log in to unmask]
> >>>> Date: Mardi 16 Septembre 2008, 17h08
> >>>> Hi,
> >>>>
> >>>> This is the output of tbss
> >>>>
> >>>> tbss_2_reg -T
> >>>>
> >>>> 070987_dti_FA_FA_to_target
> >>>> 070988_dti_FA_FA_to_target
> >>>> 070990_dti_FA_FA_to_target
> >>>> 070991_dti_FA_FA_to_target
> >>>> 070992_dti_FA_FA_to_target
> >>>> 070993_dti_FA_FA_to_target
> >>>> 070995_dti_FA_FA_to_target
> >>>> 070997_dti_FA_FA_to_target
> >>>> 071008_dti_FA_FA_to_target
> >>>> 071009_dti_FA_FA_to_target
> >>>> 071010_dti_FA_FA_to_target
> >>>> 071013_dti_FA_FA_to_target
> >>>> 071014_dti_FA_FA_to_target
> >>>> 071015_dti_FA_FA_to_target
> >>>> 071018_dti_FA_FA_to_target
> >>>> 071019_dti_FA_FA_to_target
> >>>> 28487
> >>>>
> >>>> And here is the du * output at the FA
> directory
> >>>>
> >>>> 3104 070987_dti_FA_FA_mask.nii
> >>>> 3104 070987_dti_FA_FA.nii
> >>>> 4 070987_dti_FA_FA_to_target.mat
> >>>> 0
> 070987_dti_FA_FA_to_target_warp.msf
> >>>> 3104 070988_dti_FA_FA_mask.nii
> >>>> 3104 070988_dti_FA_FA.nii
> >>>> 4 070988_dti_FA_FA_to_target.mat
> >>>> 0
> 070988_dti_FA_FA_to_target_warp.msf
> >>>> 3104 070990_dti_FA_FA_mask.nii
> >>>> 3104 070990_dti_FA_FA.nii
> >>>> 4 070990_dti_FA_FA_to_target.mat
> >>>> 0
> 070990_dti_FA_FA_to_target_warp.msf
> >>>> 3104 070991_dti_FA_FA_mask.nii
> >>>> 3104 070991_dti_FA_FA.nii
> >>>> 4 070991_dti_FA_FA_to_target.mat
> >>>> 0
> 070991_dti_FA_FA_to_target_warp.msf
> >>>> 3104 070992_dti_FA_FA_mask.nii
> >>>> 3104 070992_dti_FA_FA.nii
> >>>> 4 070992_dti_FA_FA_to_target.mat
> >>>> 0
> 070992_dti_FA_FA_to_target_warp.msf
> >>>> 3104 070993_dti_FA_FA_mask.nii
> >>>> 3104 070993_dti_FA_FA.nii
> >>>> 4 070993_dti_FA_FA_to_target.mat
> >>>> 0
> 070993_dti_FA_FA_to_target_warp.msf
> >>>> 3104 070995_dti_FA_FA_mask.nii
> >>>> 3104 070995_dti_FA_FA.nii
> >>>> 4 070995_dti_FA_FA_to_target.mat
> >>>> 0
> 070995_dti_FA_FA_to_target_warp.msf
> >>>> 3104 070997_dti_FA_FA_mask.nii
> >>>> 3104 070997_dti_FA_FA.nii
> >>>> 4 070997_dti_FA_FA_to_target.mat
> >>>> 0
> 070997_dti_FA_FA_to_target_warp.msf
> >>>> 3104 071008_dti_FA_FA_mask.nii
> >>>> 3104 071008_dti_FA_FA.nii
> >>>> 4 071008_dti_FA_FA_to_target.mat
> >>>> 0
> 071008_dti_FA_FA_to_target_warp.msf
> >>>> 3104 071009_dti_FA_FA_mask.nii
> >>>> 3104 071009_dti_FA_FA.nii
> >>>> 4 071009_dti_FA_FA_to_target.mat
> >>>> 0
> 071009_dti_FA_FA_to_target_warp.msf
> >>>> 3104 071010_dti_FA_FA_mask.nii
> >>>> 3104 071010_dti_FA_FA.nii
> >>>> 4 071010_dti_FA_FA_to_target.mat
> >>>> 0
> 071010_dti_FA_FA_to_target_warp.msf
> >>>> 3104 071013_dti_FA_FA_mask.nii
> >>>> 3104 071013_dti_FA_FA.nii
> >>>> 4 071013_dti_FA_FA_to_target.mat
> >>>> 0
> 071013_dti_FA_FA_to_target_warp.msf
> >>>> 3104 071014_dti_FA_FA_mask.nii
> >>>> 3104 071014_dti_FA_FA.nii
> >>>> 4 071014_dti_FA_FA_to_target.mat
> >>>> 0
> 071014_dti_FA_FA_to_target_warp.msf
> >>>> 3104 071015_dti_FA_FA_mask.nii
> >>>> 3104 071015_dti_FA_FA.nii
> >>>> 4 071015_dti_FA_FA_to_target.mat
> >>>> 0
> 071015_dti_FA_FA_to_target_warp.msf
> >>>> 3104 071018_dti_FA_FA_mask.nii
> >>>> 3104 071018_dti_FA_FA.nii
> >>>> 4 071018_dti_FA_FA_to_target.mat
> >>>> 0
> 071018_dti_FA_FA_to_target_warp.msf
> >>>> 3104 071019_dti_FA_FA_mask.nii
> >>>> 3104 071019_dti_FA_FA.nii
> >>>> 4 071019_dti_FA_FA_to_target.mat
> >>>> 0
> 071019_dti_FA_FA_to_target_warp.msf
> >>>> 1664 slicesdir
> >>>> 2592 target.nii.gz
> >>>> 4 tbss_2_reg.e28487.1
> >>>> 4 tbss_2_reg.e28487.10
> >>>> 4 tbss_2_reg.e28487.11
> >>>> 4 tbss_2_reg.e28487.12
> >>>> 4 tbss_2_reg.e28487.13
> >>>> 4 tbss_2_reg.e28487.14
> >>>> 4 tbss_2_reg.e28487.15
> >>>> 4 tbss_2_reg.e28487.16
> >>>> 4 tbss_2_reg.e28487.2
> >>>> 4 tbss_2_reg.e28487.3
> >>>> 4 tbss_2_reg.e28487.4
> >>>> 4 tbss_2_reg.e28487.5
> >>>> 4 tbss_2_reg.e28487.6
> >>>> 4 tbss_2_reg.e28487.7
> >>>> 4 tbss_2_reg.e28487.8
> >>>> 4 tbss_2_reg.e28487.9
> >>>> 4 tbss_2_reg.e31965.1
> >>>> 4 tbss_2_reg.e31965.10
> >>>> 4 tbss_2_reg.e31965.11
> >>>> 4 tbss_2_reg.e31965.12
> >>>> 4 tbss_2_reg.e31965.13
> >>>> 4 tbss_2_reg.e31965.14
> >>>> 4 tbss_2_reg.e31965.15
> >>>> 4 tbss_2_reg.e31965.16
> >>>> 4 tbss_2_reg.e31965.2
> >>>> 4 tbss_2_reg.e31965.3
> >>>> 4 tbss_2_reg.e31965.4
> >>>> 4 tbss_2_reg.e31965.5
> >>>> 4 tbss_2_reg.e31965.6
> >>>> 4 tbss_2_reg.e31965.7
> >>>> 4 tbss_2_reg.e31965.8
> >>>> 4 tbss_2_reg.e31965.9
> >>>> 0 tbss_2_reg.o28487.1
> >>>> 0 tbss_2_reg.o28487.10
> >>>> 0 tbss_2_reg.o28487.11
> >>>> 0 tbss_2_reg.o28487.12
> >>>> 0 tbss_2_reg.o28487.13
> >>>> 0 tbss_2_reg.o28487.14
> >>>> 0 tbss_2_reg.o28487.15
> >>>> 0 tbss_2_reg.o28487.16
> >>>> 0 tbss_2_reg.o28487.2
> >>>> 0 tbss_2_reg.o28487.3
> >>>> 0 tbss_2_reg.o28487.4
> >>>> 0 tbss_2_reg.o28487.5
> >>>> 0 tbss_2_reg.o28487.6
> >>>> 0 tbss_2_reg.o28487.7
> >>>> 0 tbss_2_reg.o28487.8
> >>>> 0 tbss_2_reg.o28487.9
> >>>> 0 tbss_2_reg.o31965.1
> >>>> 0 tbss_2_reg.o31965.10
> >>>> 0 tbss_2_reg.o31965.11
> >>>> 0 tbss_2_reg.o31965.12
> >>>> 0 tbss_2_reg.o31965.13
> >>>> 0 tbss_2_reg.o31965.14
> >>>> 0 tbss_2_reg.o31965.15
> >>>> 0 tbss_2_reg.o31965.16
> >>>> 0 tbss_2_reg.o31965.2
> >>>> 0 tbss_2_reg.o31965.3
> >>>> 0 tbss_2_reg.o31965.4
> >>>> 0 tbss_2_reg.o31965.5
> >>>> 0 tbss_2_reg.o31965.6
> >>>> 0 tbss_2_reg.o31965.7
> >>>> 0 tbss_2_reg.o31965.8
> >>>> 0 tbss_2_reg.o31965.9
> >>>>
> >>>>
> >>>> Best,
> >>>> Eleftherios
> >>>>
> >>>> Gwenaëlle DOUAUD wrote:
> >>>>
> >>>>
> >>>>> Hi,
> >>>>>
> >>>>> Eleftherios is using the 4.1 version
> (FA
> >>>>>
> >> extensions
> >>
> >>>>>
> >>>>>
> >>>> instead of FAi ones). But that was the
> problem of
> >>>>
> >> James.
> >>
> >>>>
> >>>>
> >>>>> Thanks,
> >>>>> Gwenaelle
> >>>>>
> >>>>>
> >>>>> --- En date de : Mar 16.9.08, Davide
> Imperati
> >>>>>
> >>>>>
> >>>> <[log in to unmask]> a écrit
> :
> >>>>
> >>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>>> De: Davide Imperati
> >>>>>>
> >>>>>>
> >>>> <[log in to unmask]>
> >>>>
> >>>>
> >>>>>> Objet: Re: [FSL] Re : [FSL]
> tbss_3_postreg
> >>>>>>
> >> problem
> >>
> >>>>>>
> >>>>>>
> >>>> fix not working
> >>>>
> >>>>
> >>>>>> À: [log in to unmask]
> >>>>>> Date: Mardi 16 Septembre 2008,
> 15h58
> >>>>>> hallo everybody,
> >>>>>> what version of FSL are you using?
> >>>>>> We had a similar problem with fsl
> ver 4.0.
> >>>>>> it was due to a missing library
> needed by
> >>>>>>
> >> the non
> >>
> >>>>>>
> >>>>>>
> >>>> linear
> >>>>
> >>>>
> >>>>>> registration used instead of fnirt
> in old
> >>>>>>
> >>>>>>
> >>>> releases.
> >>>>
> >>>>
> >>>>>> if you have installed fsl 4.0 try
> to run
> >>>>>>
> >> the non
> >>
> >>>>>>
> >>>>>>
> >>>> linear
> >>>>
> >>>>
> >>>>>> registration manually, and check
> for
> >>>>>>
> >> errors.
> >>
> >>>>>>
> >>>>>> Best.
> >>>>>> Davide.
> >>>>>>
> >>>>>>
> >>>>>> ----- Original Message -----
> >>>>>> From: Gwenaëlle DOUAUD
> >>>>>>
> >>>>>>
> >>>> <[log in to unmask]>
> >>>>
> >>>>
> >>>>>> Date: Tuesday, September 16, 2008
> 15:12
> >>>>>> Subject: Re: [FSL] Re : [FSL]
> >>>>>>
> >> tbss_3_postreg
> >>
> >>>>>>
> >>>>>>
> >>>> problem fix
> >>>>
> >>>>
> >>>>>> not working
> >>>>>> To: [log in to unmask]
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>> Hi Eleftherios,
> >>>>>>>
> >>>>>>> could you please try deleting
> the
> >>>>>>>
> >> *.msf files
> >>
> >>>>>>>
> >>>>>>>
> >>>> and the
> >>>>
> >>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>> .commands
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>> file, then re-run tbss_2_reg
> -T and
> >>>>>>>
> >> copy/paste
> >>
> >>>>>>>
> >>>>>>>
> >>>> in an
> >>>>
> >>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>> email the
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>> output of tbss_2_reg command
> in your
> >>>>>>>
> >> shell?
> >>
> >>>>>>> Cheers,
> >>>>>>> Gwenaelle
> >>>>>>>
> >>>>>>>
> >>>>>>> --- En date de : Mar 16.9.08,
> >>>>>>>
> >> Eleftherios
> >>
> >>>>>>>
> >>>>>>>
> >>>> Garyfallidis
> >>>>
> >>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>
> <[log in to unmask]>
> >>>>
> >> a
> >>
> >>>>
> >>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>> écrit :
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> De: Eleftherios
> Garyfallidis
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>> <eleftherios.garyfallidis@MRC-
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>> CBU.CAM.AC.UK>> Objet:
> Re: [FSL]
> >>>>>>>
> >> Re :
> >>
> >>>>>>>
> >>>>>>>
> >>>> [FSL]
> >>>>
> >>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>> tbss_3_postreg
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>> problem fix not working
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>> À: [log in to unmask]
> >>>>>>>> Date: Mardi 16 Septembre
> 2008,
> >>>>>>>>
> >> 12h41
> >>
> >>>>>>>> Dear Gwenaelle and FSL
> developers,
> >>>>>>>>
> >>>>>>>> Unfortunately, the problem
> is not
> >>>>>>>>
> >> that we
> >>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>> don't wait
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> enough for the
> >>>>>>>> non-linear registration to
> be
> >>>>>>>>
> >> finished (we
> >>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>> checked that
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> again and again
> >>>>>>>> watching the cpu load) and
> it is
> >>>>>>>>
> >> obvious
> >>
> >>>>>>>>
> >>>>>>>>
> >>>> from the
> >>>>
> >>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>> fsl list
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> that many
> >>>>>>>> people have the same
> problem with
> >>>>>>>>
> >> us. We
> >>
> >>>>>>>>
> >>>>>>>>
> >>>> tried
> >>>>
> >>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>> also to
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> replace imglob
> >>>>>>>> with remove_ext but the
> results
> >>>>>>>>
> >> are the
> >>
> >>>>>>>>
> >>>>>>>>
> >>>> same as
> >>>>
> >>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>> previously.
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> It is
> >>>>>>>> obvious now that tbss
> terminates
> >>>>>>>>
> >> much
> >>
> >>>>>>>>
> >>>>>>>>
> >>>> earlier
> >>>>
> >>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>> than it
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> should do. Here is
> >>>>>>>> the output when I try du *
> in the
> >>>>>>>>
> >> console
> >>
> >>>>>>>> 3104
> 070987_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 070987_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 070987_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 070987_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 070988_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 070988_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 070988_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 070988_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 070990_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 070990_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 070990_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 070990_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 070991_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 070991_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 070991_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 070991_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 070992_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 070992_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 070992_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 070992_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 070993_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 070993_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 070993_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 070993_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 070995_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 070995_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 070995_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 070995_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 070997_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 070997_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 070997_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 070997_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 071008_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 071008_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 071008_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 071008_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 071009_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 071009_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 071009_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 071009_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 071010_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 071010_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 071010_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 071010_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 071013_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 071013_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 071013_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 071013_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 071014_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 071014_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 071014_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 071014_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 071015_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 071015_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 071015_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 071015_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 071018_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 071018_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 071018_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 071018_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 3104
> 071019_dti_FA_FA_mask.nii
> >>>>>>>> 3104
> 071019_dti_FA_FA.nii
> >>>>>>>> 4
> >>>>>>>>
> >> 071019_dti_FA_FA_to_target.mat
> >>
> >>>>>>>> 0
> >>>>>>>>
> >> 071019_dti_FA_FA_to_target_warp.msf
> >>
> >>>>>>>> 4 log2.txt
> >>>>>>>> 0 log3.txt
> >>>>>>>> 8 log.txt
> >>>>>>>> 1664 slicesdir
> >>>>>>>> 2592 target.nii.gz
> >>>>>>>> 4 tbss_2_reg.e31965.1
> >>>>>>>> 4 tbss_2_reg.e31965.10
> >>>>>>>> 4 tbss_2_reg.e31965.11
> >>>>>>>> 4 tbss_2_reg.e31965.12
> >>>>>>>> 4 tbss_2_reg.e31965.13
> >>>>>>>> 4 tbss_2_reg.e31965.14
> >>>>>>>> 4 tbss_2_reg.e31965.15
> >>>>>>>> 4 tbss_2_reg.e31965.16
> >>>>>>>> 4 tbss_2_reg.e31965.2
> >>>>>>>> 4 tbss_2_reg.e31965.3
> >>>>>>>> 4 tbss_2_reg.e31965.4
> >>>>>>>> 4 tbss_2_reg.e31965.5
> >>>>>>>> 4 tbss_2_reg.e31965.6
> >>>>>>>> 4 tbss_2_reg.e31965.7
> >>>>>>>> 4 tbss_2_reg.e31965.8
> >>>>>>>> 4 tbss_2_reg.e31965.9
> >>>>>>>> 0 tbss_2_reg.o31965.1
> >>>>>>>> 0 tbss_2_reg.o31965.10
> >>>>>>>> 0 tbss_2_reg.o31965.11
> >>>>>>>> 0 tbss_2_reg.o31965.12
> >>>>>>>> 0 tbss_2_reg.o31965.13
> >>>>>>>> 0 tbss_2_reg.o31965.14
> >>>>>>>> 0 tbss_2_reg.o31965.15
> >>>>>>>> 0 tbss_2_reg.o31965.16
> >>>>>>>> 0 tbss_2_reg.o31965.2
> >>>>>>>> 0 tbss_2_reg.o31965.3
> >>>>>>>> 0 tbss_2_reg.o31965.4
> >>>>>>>> 0 tbss_2_reg.o31965.5
> >>>>>>>> 0 tbss_2_reg.o31965.6
> >>>>>>>> 0 tbss_2_reg.o31965.7
> >>>>>>>> 0 tbss_2_reg.o31965.8
> >>>>>>>> 0 tbss_2_reg.o31965.9
> >>>>>>>>
> >>>>>>>>
> >>>>>>>> As you can see all the msf
> files
> >>>>>>>>
> >> are empty
> >>
> >>>>>>>>
> >>>>>>>>
> >>>> and
> >>>>
> >>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>> there are no
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> _warp.nii.gz
> >>>>>>>> images.
> >>>>>>>>
> >>>>>>>> Any new suggestions?
> >>>>>>>>
> >>>>>>>> All the best,
> >>>>>>>> Eleftherios
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>> Gwenaëlle DOUAUD wrote:
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>> Hi Eleftherios,
> >>>>>>>>>
> >>>>>>>>> the fix I sent was
> *only*
> >>>>>>>>>
> >> intended for
> >>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>> George... On
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> the other hand, I
> mentioned for
> >>>>>>>>
> >> both TBSS
> >>
> >>>>>>>>
> >>>>>>>>
> >>>> and
> >>>>
> >>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>> FSL-VBM to try
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> to swap imglob to
> remove_ext if
> >>>>>>>>
> >> there was
> >>
> >>>>>>>>
> >>>>>>>>
> >>>> any
> >>>>
> >>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>> problem with
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> getting rid of the
> extensions in
> >>>>>>>>
> >> the
> >>
> >>>>>>>>
> >>>>>>>>
> >>>> scripts. I
> >>>>
> >>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>> am not even
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> sure this is your problem
> here.
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>> Apparently, your
> problem
> >>>>>>>>>
> >> appears at
> >>
> >>>>>>>>>
> >>>>>>>>>
> >>>> the
> >>>>
> >>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>> second step of
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> tbss. Have you waited long
> enough
> >>>>>>>>
> >> for the
> >>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>> non-linear
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> registration to be
> finished? If
> >>>>>>>>
> >> so, you
> >>
> >>>>>>>>
> >>>>>>>>
> >>>> should
> >>>>
> >>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>> have
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> non-empty .msf files and
> >>>>>>>>
> >> _warp.nii.gz 4D
> >>
> >>>>>>>>
> >>>>>>>>
> >>>> images.
> >>>>
> >>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>> Cheers,
> >>>>>>>>> Gwenaelle
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>> --- En date de : Ven
> 12.9.08,
> >>>>>>>>>
> >>>>>>>>>
> >>>> Eleftherios
> >>>>
> >>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>> Garyfallidis
> >>>>>>
> >>>>>>
> >>>>>>
> >> <[log in to unmask]>
> >>
> >>>>>>
> >>>>>>
> >>>> a écrit
> >>>>
> >>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> :
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>> De: Eleftherios
> >>>>>>>>>>
>
> >> Garyfallidis
> >>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >> <[log in to unmask]>
> >>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>>>> Objet: [FSL]
> >>>>>>>>>>
>
> >> tbss_3_postreg
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> problem fix
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> not
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> working
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> À:
> [log in to unmask]
> >>>>>>>>>> Date: Vendredi 12
> >>>>>>>>>>
>
> >> Septembre 2008,
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> 15h52
> >>>>
> >>>>
> >>>>>>>>>> Dear FSL
> developers,
> >>>>>>>>>>
> >>>>>>>>>> We have the same
> problem
> >>>>>>>>>>
>
> >> with many
> >>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> others when
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> using
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> tbss_3_postreg
> >>>>>>>>>> with the new fsl
> version
> >>>>>>>>>>
>
> >> (4.1.0).
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> We
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> tried to used
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> tbss3fix
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> or
> >>>>>>>>>> tbss3fix_GD as
> posted in
> >>>>>>>>>>
>
> >> the FSL
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> list
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> but we
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> didn't
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> got anything
> >>>>>>>>>> different than the
> >>>>>>>>>>
>
> >> following
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> errors:
> >>>>
> >>>>
> >>>>>>>>>> [eg01@l40 tbss]$
> tbss3fix
> >>>>>>>>>>
>
> >> -S
> >>
> >>>>>>>>>> using pre-chosen
> target
> >>>>>>>>>>
>
> >> for
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> registration
> >>>>
> >>>>
> >>>>>>>>>> transforming all
> FA images
> >>>>>>>>>>
>
> >> into
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> MNI152
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> space
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>>>> 070987_dti_FA_FA
> >>>>>>>>>> ** ERROR
> >>>>>>>>>>
>
> >> (nifti_image_read):
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> failed to
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> find header
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> file for
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>>
> '070987_dti_FA_FA_to_target_warp'
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>>>> ** ERROR:
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >> nifti_image_open(070987_dti_FA_FA_to_target_warp):
> >>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> bad
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> header info
> >>>>>>>>>> Error: failed to
> open file
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>>>>
> 070987_dti_FA_FA_to_target_warp
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> ERROR: Could not
> open
> >>>>>>>>>>
>
> >> image
> >>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>>>>
> 070987_dti_FA_FA_to_target_warp
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> Image Exception :
> #22 ::
> >>>>>>>>>>
>
> >> Failed to
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> read
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> volume
> >>>>>>
> >>>>>>
> >>>>>>
> >> 070987_dti_FA_FA_to_target_warp
> >>
> >>>>>>>>>> An error occured
> while
> >>>>>>>>>>
>
> >> reading
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> file:
> >>>>
> >>>>
> >> 070987_dti_FA_FA_to_target_warp
> >>
> >>>>>>>>>> ...
> >>>>>>>>>>
> >>>>>>>>>> ** ERROR
> >>>>>>>>>>
>
> >> (nifti_image_read):
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> failed to
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> find header
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> file for
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>>
> '070995_dti_FA_FA_to_target_warp'
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>>>> ** ERROR:
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >> nifti_image_open(070995_dti_FA_FA_to_target_warp):
> >>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> bad
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> header info
> >>>>>>>>>> Error: failed to
> open file
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>>>>
> 070995_dti_FA_FA_to_target_warp
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> ERROR: Could not
> open
> >>>>>>>>>>
>
> >> image
> >>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>>>>
> 070995_dti_FA_FA_to_target_warp
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> Image Exception :
> #22 ::
> >>>>>>>>>>
>
> >> Failed to
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> read
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> volume
> >>>>>>
> >>>>>>
> >>>>>>
> >> 070995_dti_FA_FA_to_target_warp
> >>
> >>>>>>>>>> An error occured
> while
> >>>>>>>>>>
>
> >> reading
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> file:
> >>>>
> >>>>
> >> 070995_dti_FA_FA_to_target_warp
> >>
> >>>>>>>>>> ** ERROR
> >>>>>>>>>>
>
> >> (nifti_image_read):
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> failed to
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> find header
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> file for
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>>
> '070997_dti_FA_FA_to_target_warp'
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>>>> ** ERROR:
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >> nifti_image_open(070997_dti_FA_FA_to_target_warp):
> >>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> bad
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> header info
> >>>>>>>>>>
> >>>>>>>>>> Error: failed to
> open file
> >>>>>>>>>>
>
> >> mean_FA
> >>
> >>>>>>>>>> ERROR: Could not
> open
> >>>>>>>>>>
>
> >> image
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> mean_FA
> >>>>
> >>>>
> >>>>>>>>>> Image Exception :
> #22 ::
> >>>>>>>>>>
>
> >> Failed to
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> read
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> volume
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> mean_FA
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> terminate called
> after
> >>>>>>>>>>
>
> >> throwing an
> >>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> instance of
> >>>>>>
> >>>>>>
> >>>>>>
> >>>> 'RBD_COMMON::BaseException'
> >>>>
> >>>>
> >>>>>>>>>> and that is the
> result
> >>>>>>>>>>
>
> >> when trying
> >>
> >>>>>>>>>> [eg01@l40
> tbss]$tbss3fix
> >>>>>>>>>>
>
> >> -S >
> >>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> test.log
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>>>> [eg01@l40
> tbss]$less
> >>>>>>>>>>
>
> >> test.log
> >>
> >>>>>>>>>> using pre-chosen
> target
> >>>>>>>>>>
>
> >> for
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> registration
> >>>>
> >>>>
> >>>>>>>>>> transforming all
> FA images
> >>>>>>>>>>
>
> >> into
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> MNI152
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> space
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>>>> 070987_dti_FA_FA
> >>>>>>>>>> ...
> >>>>>>>>>> 071019_dti_FA_FA
> >>>>>>>>>> *_FA.img*
> >>>>>>>>>> *_FA.hdr*
> >>>>>>>>>> merging all
> upsampled FA
> >>>>>>>>>>
>
> >> images
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> into
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> single 4D
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> image
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> creating valid
> mask and
> >>>>>>>>>>
>
> >> mean FA
> >>
> >>>>>>>>>> skeletonising mean
> FA
> >>>>>>>>>> now view
> mean_FA_skeleton
> >>>>>>>>>>
>
> >> to check
> >>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> whether the
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> default
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> threshold of 0.2
> >>>>>>>>>> needs changing,
> when
> >>>>>>>>>>
>
> >> running:
> >>
> >>>>>>>>>> tbss_4_prestats
> >>>>>>>>>>
>
> >> <threshold>
> >>
> >>>>>>>>>> The operating
> system
> >>>>>>>>>>
>
> >> version that
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> we are
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> using is
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> a 32bit
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> Red Hat
> >>>>>>>>>> Enterprise Linux
> WS
> >>>>>>>>>>
>
> >> release 4
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> (Nahant
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> Update 7)
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>> and the
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>> system has 8
> >>>>>>>>>> Intel(R) Xeon(R)
> CPUs @ 3
> >>>>>>>>>>
>
> >> GHz and
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> 16
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> Gbytes of RAM
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>>>> Any ideas why this
> fix
> >>>>>>>>>>
>
> >> doesn't
> >>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>> work
> >>>>
> >>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>> for us?
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>>>> Kind regards,
> >>>>>>>>>> Eleftherios
> Garyfallidis
> >>>>>>>>>> MRC-CBU
> >>>>>>>>>> Cambridge
> University UK
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>
> >>>
> >>>
> >
> >
> >
> >
|
