Thanks for the tip Benny.
From the MELODIC site (http://www.fmrib.ox.ac.uk/fsl/melodic/index.html), I
first understood that the GUI (“Melodic”) and the command line version
(“melodic”) are identical, just another way of using the same "program".
I now understand that this is not the case. The GUI version has many steps
and options (calling other FSL tools like “feat” and “it”) before the actual
ICA, whereas the command line version needs a preprocessed image as input.
I’m now using the command line version.
Several earlier questions on the forum (like questions why not all the GUI
options are in the usage of the command line version) are based on the same
misconception, I guess.
-Koene
On Sat, 9 Aug 2008 14:51:39 +0200, Benny Liberg <[log in to unmask]> wrote:
>You could use fslmaths.
>
>Cheers,
>Benny
>
>2008/8/8 Koene Van Dijk <[log in to unmask]>:
>> Hi,
>> I'm using MELODIC to analyze BOLD time series (TR=5). I want to apply a
>> temporal highpass filter retaining frequencies between 0.009 and 0.08 Hz
>> (thus retaining frequencies occurring between once very 111.1 sec and once
>> every 12.5 sec). I am able to set the high pass filter cutoff value in the
>> Data tab of MELODIC and on the Pre-Stats tab I can turn high pass filtering
>> "on". On the Pre-Stats tab I can also turn on Lowpass filtering but can
>> anyone tell me where I can set the Lowpass filter cutoff value? Or -if
>> setting this is not possible- can someone tell me what the default cut
off is?
>> I have also tried saving the setup (into a .fsf file) and opening that file
>> to look for clues but haven't found any.
>>
>> Thanks for any help/suggestions,
>>
>> Koene Van Dijk
>> (MELODIC 3.05, Linux)
>>
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