Hi,
I am having trouble installing v2 of analysis, I get some odd compilation messages even
after copying the ccpnmr1.0 environment.txt and using that.
below is a print out from the terminal window.
######################################################
Create environment file (y or n) (answer y unless you know otherwise)? n
cd memops/global; make
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math utility.c
gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math python_util.c
python_util.c: In function ‘valid_py_object’:
python_util.c:54: warning: passing argument 1 of ‘equal_strings’ discards qualifiers from
pointer target type
python_util.c:54: warning: passing argument 2 of ‘equal_strings’ discards qualifiers from
pointer target type
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math hash_list.c
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math hash_table.c
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math mem_cache.c
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math mutex.c
gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math py_mem_cache.c
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math block_file.c
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math int_array.c
gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math py_block_file.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
BlockFile.so utility.o python_util.o hash_list.o hash_table.o mem_cache.o mutex.o
py_mem_cache.o block_file.o int_array.o py_block_file.o
gcc -c -DNEED_GLUT_INIT -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -
I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-
common -ffast-math gl_handler.c
gcc -c -DUSE_GL_TRUE -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -
I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-
common -ffast-math py_gl_handler.c
gcc -c -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -I/sw/include -O3 -
DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math py_tk_util.c
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math w32func.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
GlHandler.so -L/usr/X11R6/lib -L/sw/lib -L/sw/lib -L/usr/X11R6/lib -L/sw/lib \
utility.o python_util.o gl_handler.o py_gl_handler.o py_tk_util.o w32func.o -
lfreeglut -lGLU -lGL -ltk -ltcl -lX11 -lXext -lm
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
MemCache.so utility.o python_util.o hash_list.o hash_table.o mem_cache.o mutex.o
py_mem_cache.o
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math pdf_handler.c
gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math py_pdf_handler.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
PdfHandler.so \
utility.o python_util.o pdf_handler.o py_pdf_handler.o
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math ps_handler.c
gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math py_ps_handler.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
PsHandler.so \
utility.o python_util.o ps_handler.o py_ps_handler.o
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math fit.c
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math gamma.c
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math gauss_jordan.c
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math line_fit.c
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math nonlinear_model.c
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math random.c
gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math py_fit.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
FitMethod.so fit.o gamma.o gauss_jordan.o line_fit.o nonlinear_model.o random.o utility.o
python_util.o py_fit.o
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math color.c
gcc -c -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -I/sw/include -O3 -
DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math tk_handler.c
gcc -c -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -I/sw/include -O3 -
DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math py_tk_handler.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
TkHandler.so -L/sw/lib -L/usr/X11R6/lib \
utility.o python_util.o color.o tk_handler.o py_tk_handler.o py_tk_util.o
w32func.o -ltk -lX11 -lXext
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math store_file.c
gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math py_store_file.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
StoreFile.so \
utility.o python_util.o store_file.o py_store_file.o
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math store_handler.c
gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math py_store_handler.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
StoreHandler.so \
utility.o python_util.o store_handler.o py_store_handler.o
cd ccp/structure; make
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math atom.c
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math bond.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_atom.c
cd ../../memops/global; make py_util_objects
make[2]: Nothing to be done for `py_util_objects'.
cd ../../memops/global; make color_objects
make[2]: Nothing to be done for `color_objects'.
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
StructAtom.so \
atom.o bond.o py_atom.o ../../memops/global/python_util.o
../../memops/global/utility.o ../../memops/global/color.o
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_bond.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
StructBond.so \
atom.o bond.o py_atom.o py_bond.o ../../memops/global/python_util.o
../../memops/global/utility.o ../../memops/global/color.o
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math structure.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -
I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-
common -ffast-math py_structure.c
cd ../../memops/global; make sorts_objects
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math sorts.c
cd ../../memops/global; make geometry_objects
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math geometry.c
cd ../../memops/global; make py_drawing_objects
gcc -c -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -I/sw/include -
I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -
ffast-math py_draw_handler.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
StructStructure.so -L/usr/X11R6/lib -L/sw/lib -L/sw/lib -L/usr/X11R6/lib -L/sw/lib \
atom.o bond.o py_atom.o py_bond.o structure.o py_structure.o
../../memops/global/python_util.o ../../memops/global/utility.o
../../memops/global/color.o \
../../memops/global/sorts.o ../../memops/global/geometry.o
../../memops/global/gl_handler.o ../../memops/global/pdf_handler.o
../../memops/global/ps_handler.o ../../memops/global/store_handler.o
../../memops/global/tk_handler.o ../../memops/global/w32func.o
../../memops/global/py_draw_handler.o ../../memops/global/py_gl_handler.o
../../memops/global/py_pdf_handler.o ../../memops/global/py_ps_handler.o
../../memops/global/py_store_handler.o ../../memops/global/py_tk_handler.o
../../memops/global/py_tk_util.o -lfreeglut -lGLU -lGL -ltk -ltcl -lX11 -lXext -lm
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math struct_util.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_struct_util.c
cd ../../memops/global; make linalg_objects
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math eigenvalue.c
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math linalg.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
StructUtil.so \
struct_util.o py_struct_util.o ../../memops/global/python_util.o
../../memops/global/utility.o \
../../memops/global/geometry.o ../../memops/global/eigenvalue.o
../../memops/global/linalg.o
cd ccpnmr/analysis; make
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math contour_data.c
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math contour_levels.c
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math contour_style.c
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math contour_file.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -
I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-
common -ffast-math py_contour_levels.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -
I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-
common -ffast-math py_contour_style.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -
I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-
common -ffast-math py_contour_file.c
cd ../../memops/global; make py_block_file_objects
make[2]: Nothing to be done for `py_block_file_objects'.
cd ../../memops/global; make py_store_file_objects
make[2]: Nothing to be done for `py_store_file_objects'.
cd ../../memops/global; make contour_objects
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math contourer.c
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math list.c
cd ../../memops/global; make py_drawing_objects
make[2]: Nothing to be done for `py_drawing_objects'.
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
ContourFile.so -L/usr/X11R6/lib -L/sw/lib -L/sw/lib -L/usr/X11R6/lib -L/sw/lib \
contour_data.o contour_levels.o contour_style.o contour_file.o
py_contour_levels.o py_contour_style.o py_contour_file.o
../../memops/global/python_util.o ../../memops/global/utility.o
../../memops/global/hash_list.o ../../memops/global/hash_table.o
../../memops/global/mem_cache.o ../../memops/global/mutex.o
../../memops/global/py_mem_cache.o ../../memops/global/block_file.o
../../memops/global/int_array.o ../../memops/global/py_block_file.o \
../../memops/global/store_file.o ../../memops/global/py_store_file.o \
../../memops/global/contourer.o ../../memops/global/list.o
../../memops/global/gl_handler.o ../../memops/global/pdf_handler.o
../../memops/global/ps_handler.o ../../memops/global/store_handler.o
../../memops/global/tk_handler.o ../../memops/global/w32func.o
../../memops/global/py_draw_handler.o ../../memops/global/py_gl_handler.o
../../memops/global/py_pdf_handler.o ../../memops/global/py_ps_handler.o
../../memops/global/py_store_handler.o ../../memops/global/py_tk_handler.o
../../memops/global/py_tk_util.o -lfreeglut -lGLU -lGL -ltk -ltcl -lX11 -lXext -lm
cd ../../memops/global; make py_mem_cache_objects
make[2]: Nothing to be done for `py_mem_cache_objects'.
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
ContourStyle.so \
contour_style.o py_contour_style.o ../../memops/global/python_util.o
../../memops/global/utility.o ../../memops/global/hash_list.o
../../memops/global/hash_table.o ../../memops/global/mem_cache.o
../../memops/global/mutex.o ../../memops/global/py_mem_cache.o
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
ContourLevels.so \
contour_levels.o py_contour_levels.o ../../memops/global/python_util.o
../../memops/global/utility.o ../../memops/global/hash_list.o
../../memops/global/hash_table.o ../../memops/global/mem_cache.o
../../memops/global/mutex.o ../../memops/global/py_mem_cache.o
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math method.c
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math peak.c
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math peak_list.c
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math symbol.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_peak.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_peak_list.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
PeakList.so \
method.o peak.o peak_list.o symbol.o py_peak.o py_peak_list.o
../../memops/global/python_util.o ../../memops/global/utility.o
../../memops/global/hash_list.o ../../memops/global/hash_table.o
../../memops/global/mem_cache.o ../../memops/global/mutex.o
../../memops/global/py_mem_cache.o ../../memops/global/block_file.o
../../memops/global/int_array.o ../../memops/global/py_block_file.o -lm
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math slice_file.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -
I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-
common -ffast-math py_slice_file.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
SliceFile.so -L/usr/X11R6/lib -L/sw/lib -L/sw/lib -L/usr/X11R6/lib -L/sw/lib \
slice_file.o py_slice_file.o ../../memops/global/python_util.o
../../memops/global/utility.o ../../memops/global/hash_list.o
../../memops/global/hash_table.o ../../memops/global/mem_cache.o
../../memops/global/mutex.o ../../memops/global/py_mem_cache.o
../../memops/global/block_file.o ../../memops/global/int_array.o
../../memops/global/py_block_file.o \
../../memops/global/gl_handler.o ../../memops/global/pdf_handler.o
../../memops/global/ps_handler.o ../../memops/global/store_handler.o
../../memops/global/tk_handler.o ../../memops/global/w32func.o
../../memops/global/py_draw_handler.o ../../memops/global/py_gl_handler.o
../../memops/global/py_pdf_handler.o ../../memops/global/py_ps_handler.o
../../memops/global/py_store_handler.o ../../memops/global/py_tk_handler.o
../../memops/global/py_tk_util.o -lfreeglut -lGLU -lGL -ltk -ltcl -lX11 -lXext -lm
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math win_peak_list.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -
I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-
common -ffast-math py_win_peak_list.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
WinPeakList.so -L/usr/X11R6/lib -L/sw/lib -L/sw/lib -L/usr/X11R6/lib -L/sw/lib \
method.o peak.o peak_list.o symbol.o win_peak_list.o py_peak.o
py_peak_list.o py_win_peak_list.o ../../memops/global/python_util.o
../../memops/global/utility.o ../../memops/global/hash_list.o
../../memops/global/hash_table.o ../../memops/global/mem_cache.o
../../memops/global/mutex.o ../../memops/global/py_mem_cache.o
../../memops/global/block_file.o ../../memops/global/int_array.o
../../memops/global/py_block_file.o \
../../memops/global/gl_handler.o ../../memops/global/pdf_handler.o
../../memops/global/ps_handler.o ../../memops/global/store_handler.o
../../memops/global/tk_handler.o ../../memops/global/w32func.o
../../memops/global/py_draw_handler.o ../../memops/global/py_gl_handler.o
../../memops/global/py_pdf_handler.o ../../memops/global/py_ps_handler.o
../../memops/global/py_store_handler.o ../../memops/global/py_tk_handler.o
../../memops/global/py_tk_util.o -lfreeglut -lGLU -lGL -ltk -ltcl -lX11 -lXext -lm
cd ccpnmr/clouds; make
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math atom_coord.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_atom_coord.c
cd ../../memops/global; make py_util_objects
make[2]: Nothing to be done for `py_util_objects'.
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
AtomCoord.so atom_coord.o py_atom_coord.o ../../memops/global/python_util.o
../../memops/global/utility.o
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math atom_coord_list.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_atom_coord_list.c
py_atom_coord_list.c:316: warning: initialization from incompatible pointer type
py_atom_coord_list.c:319: warning: initialization from incompatible pointer type
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
AtomCoordList.so atom_coord.o py_atom_coord.o atom_coord_list.o
py_atom_coord_list.o ../../memops/global/python_util.o ../../memops/global/utility.o
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math dist_force.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_dist_force.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
DistForce.so dist_force.o py_dist_force.o ../../memops/global/python_util.o
../../memops/global/utility.o
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math dist_constraint.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_dist_constraint.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
DistConstraint.so dist_constraint.o py_dist_constraint.o ../../memops/global/python_util.o
../../memops/global/utility.o
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math dist_constraint_list.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_dist_constraint_list.c
py_dist_constraint_list.c:321: warning: initialization from incompatible pointer type
py_dist_constraint_list.c:324: warning: initialization from incompatible pointer type
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
DistConstraintList.so dist_constraint.o py_dist_constraint.o dist_constraint_list.o
py_dist_constraint_list.o ../../memops/global/python_util.o ../../memops/global/utility.o
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math dynamics.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_dynamics.c
cd ../../memops/global; make random_objects
make[2]: Nothing to be done for `random_objects'.
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
Dynamics.so atom_coord.o atom_coord_list.o dist_constraint.o dist_constraint_list.o
dist_force.o dynamics.o py_atom_coord.o py_atom_coord_list.o py_dist_constraint.o
py_dist_constraint_list.o py_dist_force.o py_dynamics.o \
../../memops/global/python_util.o ../../memops/global/utility.o
../../memops/global/random.o -lm
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math midge.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_midge.c
cd ../../memops/global; make diag_objects
gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math diag_dbl.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
Midge.so midge.o py_midge.o \
../../memops/global/python_util.o ../../memops/global/utility.o
../../memops/global/diag_dbl.o -lm
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_cloud_util.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
CloudUtil.so py_cloud_util.o -lm
gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-
math bacus.c
gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC
-fno-common -ffast-math py_bacus.c
gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,-
dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli
b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o
Bacus.so bacus.o py_bacus.o \
../../memops/global/python_util.o ../../memops/global/utility.o -lm
rm: *.so: No such file or directory
rm: *.so: No such file or directory
rm: *.so: No such file or directory
#######################################################
the program does not start so I tried running AnalysisGui.py from the command line and
got this:
Traceback (most recent call last):
File "AnalysisGui.py", line 70, in <module>
from memops.general.Io import loadProject
ImportError: cannot import name loadProject
I notice there are some memops related problems in the compilation process...
This happens on both my OS X box and a Linux box.
cheers,
Jo Claridge
|