Did you try "MOLE" (also available as a PyMOL plugin)?
http://mole.chemi.muni.cz/download.php
Karsten
Jiamu Du wrote:
> Dear all,
> I want to prepare a figure to present the surface of a channel inside of a
> protein as shown in the attached figure.
> I have used the program PASS and PYMOL (with CAVER) to make this figure.
> Both the programs fail to find the channel. But the channel is large enough
> in fact.
> Is there any other program can be used for preparing these figures?
>
> Thanks.
>
>
>
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