Thanks a lot for this hint: it works! Including REFMAC, which ran to
completion and used Arp/Warp to add waters successfully.
Anita
Le 25 août 08 à 16:04, William G. Scott a écrit :
> Under 10.5.X, sudo doesn't inherit the environment. So the best
> thing to do is start a root process like this:
>
> /bin/bash
>
> (or /bin/zsh or /bin/tcsh )
>
> source /usr/local/ccp4-6.0.2/include/ccp4.setup-bash
>
> (or whatever it is for your shell)
>
> Then issue ccp4i
>
>
> William G. Scott
>
> Contact info:
> http://chemistry.ucsc.edu/~wgscott/
>
>
> On Aug 25, 2008, at 6:05 AM, Anita Bentley wrote:
>
>> My faithful old Mac G5 siezed up and I have to use a brand new
>> MacBook Pro from now on. It's an Intel machine with Leopard.
>>
>> I managed to install CCP4 together with TLK/BLK programmes. After a
>> long while searching for bltwish routines I discovered that they
>> are automatically installed in /usr/local/bin and not in /sw/bin as
>> suggested in the ccp4 setup files (!). With this problem sorted
>> out, I was able to start ccp4i GUI fine.
>> I get the message that "I am the first person to run this
>> version ... and should get the right person to configure the
>> interface ...". However, when I try to run ccp4i with "sudo" in
>> order to have the priviledges to configure it, I am unable to run it:
>>
>> "macbookpro-bentley 7% sudo ccp4i
>> /usr/local/ccp4-6.0.2/bin/ccp4i: line 4: /bltwish: No such file or
>> directory
>> /usr/local/ccp4-6.0.2/bin/ccp4i: line 4: exec: /bltwish: cannot
>> execute: No such file or directory"
>>
>> I've modified the -sh and -csh files (I have a one-line login.com
>> to get me under csh as user) to no avail. What do I have to do to
>> be able to configure the interface???
>>
>> The underlying problem is that I cannot run REFMAC in the present
>> state of things, I get the following error:
>> "Error from script
>> /usr/local/ccp4-6.0.2/share/ccp4i/scripts/refmac5.script: can't
>> read "cell": no such variable"
>> which makes me think the configuration of the interface is not
>> quite right.
>>
>> Any help is greatly appreciated!
>>
>> Anita
>>
>>
>>
>>
>> Anita Lewit-Bentley
>> LBPA
>> Ecole Normale Supérieure de Cachan
>> 61, avenue du Président Wilson
>> 94235 Cachan cedex
>> FRANCE
>>
>> tel: 33-(0)1-47 40 76 65
>> fax: 33-(0)1 47 40 76 71
>> e-mail: [log in to unmask]
>>
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