> Sorry, my mistake, I was aware about this difference. However, I'm still
> not sure whether this is the correct procedure: 1. "Coregister" T1 of the
> subject to the EPIs of the subject
> 2. "Segment" the T1 of the subject including normalisation
> 3. "Normalise" the EPIs by applying the matrix generated by step 2
That's it. When you do the coregistration, there is no need to do any
reslicing.
>
> > This paper may be of interest here:
> > Crinion J, Ashburner J, Leff A, Brett M, Price C, Friston K. (2007).
> > "Spatial normalization of lesioned brains: Performance evaluation and
> > impact on fMRI analyses". NeuroImage 37(3):866--875
>
> Thanks a lot, this paper was very helpful and informative
>
> A question regarding this paper: The regularisation manipulated in the
> paper was the "Bias Regularisation" in he SPM5-Segment options, is that
> correct? If that is right, which are the according regularisation levels in
> SPM5? Light-Medium-Heavy?
It was the warping regularisation, but I don't remember what values Jenny
used. I think "medium" was the default value of 1, but I'm really not sure
of the others.
Best regards,
-John
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