Hi,
I've just upgraded to FSL 4.0.4 and discover some of my images do not appear
where they are expected within the Viewer even though they looked fine in
FSL 3. I tried the "correctheader" option and that doesn't take care of it.
This seems to be the same issue as some concerns from last year, but the
threads were never resolved:
013039 07/09/02 16:27 30 More Nifti Shifting
012941 07/08/30 00:06 15 Re: location of masks shift from FSL3.3 to
FSL4.0
Is there a solution to this problem so that I don't lose my previous work?
For example, the "data.nii" and "nodif.nii" files used as input to FDT (FSL
3) no longer align with the outputs when viewed in FSL 4. This can be as
few as 6 pixels difference or as much as 60 in a 128 x 128 image (i.e. brain
now shifted all the way to the side and wrapping around.)
thanks,
Ruth
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