Hi - if by Brodmann you mean the Talairach atlas, as generated at
Texas, then yes we do include that already (or was there another
Brodmann-related atlas you were thinking of?). We don't include AAL -
it's not a terribly good atlas compared to the probabilistic ones.....
Cheers, Steve.
On 12 Jul 2008, at 16:45, Michael T Rubens wrote:
> Hi Gwenaëlle and FSL users,
>
> Thank you for your reply. I am aware of the atlas tools included with
> FSL, which is why I specifically referred to the AAL and the Brodmann
> atlases which are not included. These are the only atlases used by
> MRIcro & MRIcron, and some reviewers inquire as to where certain
> activations/correlations fall on these maps. Are they available for
> FSLview in any capacity? If not, can someone please provide me some
> guidance on how to create an atlas if I want to use the AAL and
> Brodmann images from MRIcron (i.e., value of voxel = certain brain
> region)?
>
> Thank you,
> Michael Rubens
>
> --
> Research Associate
> Department of Neurology
> University of California, San Francisco
>
> On Sat, Jul 12, 2008 at 3:44 AM, Gwenaëlle DOUAUD
> <[log in to unmask]> wrote:
>> Hi Michael,
>>
>> yes, in the recent version of fslview (in "Tools"), you can have
>> access to various atlases, probabilistic and not... Please have a
>> look at http://fsl.fmrib.ox.ac.uk/fsl/fslview/atlas.html and http://fsl.fmrib.ox.ac.uk/fsl/fslview/atlas-descriptions.html
>> .
>>
>> Cheers,
>> Gwenaëlle
>>
>>
>>
>> --- En date de : Sam 12.7.08, Michael T Rubens <[log in to unmask]
>> > a écrit :
>>
>>> De: Michael T Rubens <[log in to unmask]>
>>> Objet: [FSL] AAL & brodmann atlases
>>> À: [log in to unmask]
>>> Date: Samedi 12 Juillet 2008, 1h58
>>> Hello FSL users,
>>>
>>> Disregarding their validity, are AAL and/or brodmann
>>> atlases available
>>> anywhere to use with FSLview?
>>>
>>> Thank you,
>>> Michael Rubens
>>>
>>>
>>> --
>>> Research Associate
>>> Department of Neurology
>>> University of California, San Francisco
>>
>>
>>
>> _____________________________________________________________________________
>> Envoyez avec Yahoo! Mail. Une boite mail plus intelligente http://mail.yahoo.fr
>>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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