Hi:
Yes... there are *_GM.nii.gz images in FAi directory... Here are some
files:
fslvbm2a.e31577.1
=====
FAST - FMRIB's Automated Segmentation Tool Version 3.53
Image: /tmp/fsl_RQoZ9l_CON_DMG_FAi_brain
T1-weighted image
Imagesize : 173 x 254 x 254
Pixelsize : 1 x 0.94 x 0.94
Initial K-means segmentation...
8 main iterations ...
Estimating PVE...
Segmentation done successfully!
Calculation time 272 seconds!
Write segmentation image /tmp/fsl_RQoZ9l.fastout/QQQQQ_seg.hdr Successfully!
Write PVE image of tissue 0 Successfully!
Write PVE image of tissue 1 Successfully!
Write PVE image of tissue 2 Successfully!
Class: CSF tissue 1 tissue 2 brain percentage
Volumes: 0.828112
WARNING:: Flipping Left/Right orientation (as det < 0)
=================================================
fslvbm2b.e2302.1
=====
/usr/local/fsl/bin/DR/areg: error while loading shared libraries:
libglut.so.3: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/DR/transformation: error while loading shared
libraries: libglut.so.3: cannot open shared object file: No such file or
directory
==================================================
fslvbm2c.e3017
=====
** ERROR (nifti_image_read): failed to find header file for
'CON_DMG_FAi_GM_to_T'
** ERROR: nifti_image_open(CON_DMG_FAi_GM_to_T): bad header info
Error: failed to open file CON_DMG_FAi_GM_to_T
Cannot open volume CON_DMG_FAi_GM_to_T for reading!
** ERROR (nifti_image_read): failed to find header file for 'template_4D_GM'
** ERROR: nifti_image_open(template_4D_GM): bad header info
Error: failed to open file template_4D_GM
Cannot open volume template_4D_GM for reading!
===================================================
Which could be the problem ?...
Sincerely,
--
Gonzalo Rojas Costa
Laboratory of Medical Image Processing
Department of Neuroradiology
Institute of Neurosurgery Dr. Asenjo
Jose Manuel Infante 553, Providencia, Santiago, Chile.
Tel/Fax: 56-2-5754653
Cel: 56-9-97771785
www.neurorradiologia.cl
> Date: Mon, 7 Jul 2008 14:08:03 +0000
> From: <[log in to unmask]>
> Subject: Re : [FSL] FSL-VBM question...
>
> Hi Gonzalo,
>
> have any *_GM.nii.gz images been created in your struc (or FAi,
> depending on your FSL version) directory?
> If not, could you please copy paste what's written in the fslvbm2a.e*
> text file?
>
> Thanks,
> Gwenaelle
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