Hello all,
I'm using BET to strip the brains of MP-RAGE images. I don't get a good
strip with the default settings, so I've been entering brain center
coordinates myself as well as using some of the other functions offered.
My question is that I usually end up getting a very reasonable strip,
but there is a little bit of extraneous material left near the brain
stem, that I cannot seem to get rid off. I've run the data through and
the registrations look reasonable at single session. My question is will
this cause problems at subject or group level registrations? And also
are there tools one could use to just quickly cut that extraneous
material out?
Thanks,
Vina
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