Dear Steve,
Have you guys had a chance to fix this bug?
(the '-plot' option is irrelevant: the bug is with the '-meanvol' option).
Thanks!
Cheers,
-Pablo
On Tue, 21 Aug 2007 06:56:56 +0100, Steve Smith <[log in to unmask]> wrote:
>Indeed - that appears not to work - we don't generally use the -
>meanvol option so haven't seen this.
>Presumably a simple workaround is to just run mcflirt twice, once to
>get the initial alignment, then usefslmaths to create the mean, then
>run again with -reffile.
>We'll get onto debugging this.
>Cheers, Steve.
>
>
>On 20 Aug 2007, at 20:15, Robert Terwilliger wrote:
>
>> Dear FMRIB,
>>
>> Are -plots and -meanvol mutually exclusive command-line opts for
>> mcflirt? I consistently get the following error when using the two:
>>
>> Image Exception : #5 :: Out of Bounds (time index)
>> terminate called after throwing an instance of
>> 'RBD_COMMON::BaseException'
>> Abort trap
>>
>> Regards,
>>
>> Robert Terwilliger
>>
>> PS, this is from the fsl 4.0.0 release. Not sure if it was an error
>> on previous releases.
>>
>>
>
>
>------------------------------------------------------------------------
>---
>Stephen M. Smith, Professor of Biomedical Engineering
>Associate Director, Oxford University FMRIB Centre
>
>FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>+44 (0) 1865 222726 (fax 222717)
>[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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