Hi,
This should be fixed from FSL4.0.1 onwards...
Many regards
Matthew
> Dear Steve,
>
> Have you guys had a chance to fix this bug?
> (the '-plot' option is irrelevant: the bug is with the '-meanvol'
> option).
>
> Thanks!
>
> Cheers,
>
> -Pablo
>
>
>
> On Tue, 21 Aug 2007 06:56:56 +0100, Steve Smith
> <[log in to unmask]> wrote:
>
>> Indeed - that appears not to work - we don't generally use the -
>> meanvol option so haven't seen this.
>> Presumably a simple workaround is to just run mcflirt twice, once to
>> get the initial alignment, then usefslmaths to create the mean, then
>> run again with -reffile.
>> We'll get onto debugging this.
>> Cheers, Steve.
>>
>>
>> On 20 Aug 2007, at 20:15, Robert Terwilliger wrote:
>>
>>> Dear FMRIB,
>>>
>>> Are -plots and -meanvol mutually exclusive command-line opts for
>>> mcflirt? I consistently get the following error when using the two:
>>>
>>> Image Exception : #5 :: Out of Bounds (time index)
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Abort trap
>>>
>>> Regards,
>>>
>>> Robert Terwilliger
>>>
>>> PS, this is from the fsl 4.0.0 release. Not sure if it was an error
>>> on previous releases.
>>>
>>>
>>
>>
>> ------------------------------------------------------------------------
>> ---
>> Stephen M. Smith, Professor of Biomedical Engineering
>> Associate Director, Oxford University FMRIB Centre
>>
>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>> +44 (0) 1865 222726 (fax 222717)
>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>> ------------------------------------------------------------------------
>> ---
>> ===========================================================
> ==============
>
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