Wayne Boucher wrote:
> Hello,
>
> Tim did not use installCode.py (for the reason you mention). Which is why
> he attached the environment.txt he used. This problem will be fixed.
> Indeed, in the last half hour I have just managed to install Ubuntu 8.0.4
> on my Mac (yes, I know, my poor Mac feels stabbed in the back). So I'll
> be able to work with this more easily now.
>
> Wayne
>
>
ok that makes sense
regards
gary
> On Mon, 2 Jun 2008, Gary Thompson wrote:
>
>
>> Tim Stevens wrote:
>>
>>>>> I tried installing the analysis package in Ubuntu 8.04. But it returns
>>>>> the following error.
>>>>>
>>>>> My question is when will an error free ccpnmr package be released? In
>>>>> fact I have been trying to install ccpnmr for the last 4 years in linux,
>>>>> but never once succeeded. The precompiled version for Windows works
>>>>> well, for a linux precompiled version will better.
>>>>>
>>>>>
>>> I have come out of hiding because I feel obliged to reply to this one.
>>>
>>> CCPN has definitely been installable on Linux systems for the past 4
>>> years. It really does work and I suspect that a large proportion of the
>>> CCPN users successfully use it under Linux.
>>>
>>> If there is a problem, after having a reasonable attempt at installation,
>>> the best route would be to simply send an email to us at the _earliest_
>>> opportunity. This way other users get the benefit of any improvements to
>>> the installation script, documentation or whatever may be required. :-)
>>>
>>> Since its release I have personally been using Ubuntu 8.04 with CCPN.
>>> After installing the packages (as described on the web site) thus:
>>>
>>>
>>>
>>>> sudo apt-get install python-dev python-tk tk8.4-dev libx11-dev freeglut3-dev libglu1-mesa-dev
>>>>
>>>>
>>>
>>>
>> Hi Tim
>>
>> This sounds really good. It used to be that under ubuntu the 'python
>> installCode.py' analysis script used to fail because the directory
>> structure for tcl and tk under ubuntu didn't match that expected by the
>> script. So did you use the 'python installCode.py' script?
>>
>> regards
>> gary
>>
>>> Hopefully this seems to avoid any issues with the bundled Tcl/Tk that Gary
>>> mentions. I used the attached environment.txt file, which goes into the
>>> .../ccpnmr1.0/c/ directory inside the installation. There is a problem
>>> with the install script with later Ubuntus, so until this is fixed a more
>>> manual installation is needed. In the same directory I then do:
>>>
>>>
>>>
>>>> make clean ; make ; make links
>>>>
>>>>
>>> To compile everything. If a bin/ directory is required for launching the
>>> programs, then Wayne can give further instructions.
>>>
>>> T.
>>>
>>> -------------------------------------------------------------------------------
>>> Dr Tim Stevens Email: [log in to unmask]
>>> Department of Biochemistry [log in to unmask]
>>> University of Cambridge Phone: +44 1223 766018 (office)
>>> 80 Tennis Court Road +44 7816 338275 (mobile)
>>> Old Addenbrooke's Site +44 1223 364613 (home)
>>> Cambridge CB2 1GA WWWeb: http://www.bio.cam.ac.uk/~tjs23
>>> United Kingdom http://www.ccpn.ac.uk
>>> -------------------------------------------------------------------------------
>>> ------ +NH3CH(CH(CH3)OH)C(O)NHCH(CH(CH3)CH2CH3)C(O)NHCH(CH2CH2SCH3)CO2- -------
>>> -------------------------------------------------------------------------------
>>>
>>>
>>> ------------------------------------------------------------------------
>>>
>>> # the C compiler
>>> CC = cc
>>> # use below for everything with -fPIC option (e.g. gcc)
>>> CFLAGS = -O -m64 -fPIC
>>>
>>> # shared
>>> SHARED_FLAGS = -shared
>>>
>>> # math
>>> MATH_LIB = -lm
>>>
>>> # X11
>>> X11_DIR = /usr/X11R6
>>> X11_LIB = -lX11 -lXext
>>> X11_INCLUDE_FLAGS = -I$(X11_DIR)/include
>>> X11_LIB_FLAGS = -L$(X11_DIR)/lib64
>>>
>>> # Tcl
>>> TCL_DIR = /usr
>>> TCL_LIB = -ltcl8.4
>>> TCL_INCLUDE_FLAGS = -I$(TCL_DIR)/include/tcl8.4
>>> TCL_LIB_FLAGS = -L$(TCL_DIR)/lib64
>>>
>>> # Tk
>>> TK_DIR = /usr
>>> TK_LIB = -ltk8.4
>>> TK_INCLUDE_FLAGS = -I$(TK_DIR)/include/tcl8.4
>>> TK_LIB_FLAGS = -L$(TK_DIR)/lib64
>>>
>>> # Python
>>> PYTHON_DIR = /usr
>>> PYTHON_INCLUDE_FLAGS = -I$(PYTHON_DIR)/include/python2.5
>>>
>>> IGNORE_GL_FLAG =
>>> # use below if you want to ignore GL
>>> #IGNORE_GL_FLAG = -DIGNORE_GL
>>>
>>> GLUT_FLAG = -DNEED_GLUT_INIT
>>>
>>> # GL
>>> GL_DIR = /usr
>>> GL_LIB = -lglut -lGLU -lGL
>>> GL_INCLUDE_FLAGS = -I$(GL_DIR)/include
>>> GL_LIB_FLAGS = -L$(GL_DIR)/lib64
>>>
>>>
>> --
>> -------------------------------------------------------------------
>> Dr Gary Thompson
>> Astbury Centre for Structural Molecular Biology,
>> University of Leeds, Astbury Building,
>> Leeds, LS2 9JT, West-Yorkshire, UK Tel. +44-113-3433024
>> email: [log in to unmask] Fax +44-113-2331407
>> -------------------------------------------------------------------
>>
>>
>
> .
>
>
--
-------------------------------------------------------------------
Dr Gary Thompson
Astbury Centre for Structural Molecular Biology,
University of Leeds, Astbury Building,
Leeds, LS2 9JT, West-Yorkshire, UK Tel. +44-113-3433024
email: [log in to unmask] Fax +44-113-2331407
-------------------------------------------------------------------
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