If anybody have used "reduce" (http://kinemage.biochem.duke.edu/software/reduce.php) to fix hydrogens to residues in PDB, then I highly appeciate suggestion on my problem as follows.
Running "reduce" (new version 3.13) I can see hydrogens are fixed to protein residues.
But if ligand is covalently or non-covantly bound to protein, then how hydrogen is fixed to protein residue covalently bound to ligand or noncovalent ligand using "reduce". I did not get any result on HETATM in the PDB running "reduce" in the same way.
Thanks. Sam.
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