Dear Prof. Smith
in the files tbss_2_reg.e*, I've found
the following contents:
I upload you the directory and I'll mail
you the ID
Thanks a lot
Donatella Giuliani
/usr/local/fsl/bin/DR/areg: error while loading shared libraries: libstdc++.so.5: cannot open shared object
file: No such file or directory
/usr/local/fsl/bin/DR/nreg: error while loading shared libraries: libstdc++.so.5: cannot open shared object
file: No such file or directory
/usr/local/fsl/bin/DR/dof2gipl: error while loading shared libraries: libstdc++.so.5: cannot open shared
object file: No such file or directory
/usr/local/fsl/bin/DR/dof2gipl: error while loading shared libraries: libstdc++.so.5: cannot open shared
object file: No such file or directory
** ERROR (nifti_image_read): failed to find header file for 'grotNx'
** ERROR: nifti_image_open(grotNx): bad header info
Error: failed to open file grotNx
Cannot open volume grotNx for reading!
** ERROR (nifti_image_read): failed to find header file for 'grotNy'
** ERROR: nifti_image_open(grotNy): bad header info
Error: failed to open file grotNy
Cannot open volume grotNy for reading!
** ERROR (nifti_image_read): failed to find header file for 'grotNz'
** ERROR: nifti_image_open(grotNz): bad header info
Error: failed to open file grotNz
Cannot open volume grotNz for reading!
** ERROR (nifti_image_read): failed to find header file for 'grotSx'
** ERROR: nifti_image_open(grotSx): bad header info
Error: failed to open file grotSx
Cannot open volume grotSx for reading!
** ERROR (nifti_image_read): failed to find header file for 'grotSS'
** ERROR: nifti_image_open(grotSS): bad header info
Error: failed to open file grotSS
ERROR: Could not open image grotSS
Image Exception : #22 :: Failed to read volume grotSS
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl/bin/tbss_reg: line 136: 13559 Aborted $FSLDIR/bin/fslstats grotSS M
P
50
>../${I2R}_nonlinear.msf
/usr/local/fsl/bin/DR/dof2gipl: error while loading shared libraries: libstdc++.so.5: cannot open shared
object file: No such file or directory
** ERROR (nifti_image_read): failed to find header file for
'C119_PL_dti_FA_FAi_to_target_nonlineartmpX'
** ERROR: nifti_image_open(C119_PL_dti_FA_FAi_to_target_nonlineartmpX): bad header info
Error: failed to open file C119_PL_dti_FA_FAi_to_target_nonlineartmpX
Cannot open volume C119_PL_dti_FA_FAi_to_target_nonlineartmpX for reading!
** ERROR (nifti_image_read): failed to find header file for
'C119_PL_dti_FA_FAi_to_target_nonlineartmpY'
** ERROR: nifti_image_open(C119_PL_dti_FA_FAi_to_target_nonlineartmpY): bad header info
Error: failed to open file C119_PL_dti_FA_FAi_to_target_nonlineartmpY
Cannot open volume C119_PL_dti_FA_FAi_to_target_nonlineartmpY for reading!
** ERROR (nifti_image_read): failed to find header file for
'C119_PL_dti_FA_FAi_to_target_nonlineartmpZ'
** ERROR: nifti_image_open(C119_PL_dti_FA_FAi_to_target_nonlineartmpZ): bad header info
Error: failed to open file C119_PL_dti_FA_FAi_to_target_nonlineartmpZ
Cannot open volume C119_PL_dti_FA_FAi_to_target_nonlineartmpZ for reading!
** ERROR (nifti_image_read): failed to find header file for
'C119_PL_dti_FA_FAi_to_target_nonlineartmpXX'
** ERROR: nifti_image_open(C119_PL_dti_FA_FAi_to_target_nonlineartmpXX): bad header info
Error: failed to open file C119_PL_dti_FA_FAi_to_target_nonlineartmpXX
Cannot open volume C119_PL_dti_FA_FAi_to_target_nonlineartmpXX for reading!
/bin/rm: cannot remove `C119_PL_dti_FA_FAi_to_target_nonlineartmp*': No such file or directory
---------- Initial Header -----------
From : "FSL - FMRIB's Software Library" [log in to unmask]
To : [log in to unmask]
Cc :
Date : Sat, 3 May 2008 09:01:02 -0400
Subject : Re: [FSL] TBSS
> Hi,
>
> The registrations have not completed - there may be some useful
> information in the tbss_2_reg.e* files. If this doesn't help you to
> resolve what's happening, please upload the whole directory for us to
> look at.
>
> Please upload the files in a single compressed tarfile to
> http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
> And then email me the upload ID.
>
>
> Cheers.
>
>
>
> On 3 May 2008, at 05:53, [log in to unmask] wrote:
>
> > Dear Prof. Smith
> > just few minutes later the execution of the command
> > "tbss_2_reg -T" appears the number 13287
> > and in the dir FAi are generated, as you can see
> > from below, the files (attached with the e-mail)
> > tbss_2_reg.e13287.1
> > tbss_2_reg.e13287.2
> >
> > In the slicesdir are images of good quality
> > Thanks for your attention
> >
> > Donatella Giuliani
> >
> > [giuliani@localhost TBSS_NEW]$ tbss_2_reg -T
> > C117_GB_dti_FA_FAi_to_target
> > C119_PL_dti_FA_FAi_to_target
> > 13287
> >
> > [giuliani@localhost TBSS_NEW]$ ls
> > FAi origdata
> >
> > [giuliani@localhost TBSS_NEW]$ cd FAi
> > [giuliani@localhost FAi]$ ls lart
> > total 15472
> > rwrwr1
> > giuliani giuliani 666792 May 2 09:54 C117_GB_dti_FA_FAi.img
> > rwrwr1
> > giuliani giuliani 348 May 2 09:54 C117_GB_dti_FA_FAi.hdr
> > rwrwr1
> > giuliani giuliani 666792 May 2 09:54 C119_PL_dti_FA_FAi.img
> > rwrwr1
> > giuliani giuliani 348 May 2 09:54 C119_PL_dti_FA_FAi.hdr
> > drwxrwxrx
> > 4 giuliani giuliani 4096 May 2 09:54 ..
> > drwxrwxrx
> > 2 giuliani giuliani 4096 May 2 09:54 slicesdir
> > rwrwr1
> > giuliani giuliani 0 May 2 09:56 tbss_2_reg.o13287.2
> > rwrwr1
> > giuliani giuliani 0 May 2 09:56 tbss_2_reg.o13287.1
> > rwrwr1
> > giuliani giuliani 3389 May 2 09:56 tbss_2_reg.e13287.2
> > rwrwr1
> > giuliani giuliani 3389 May 2 09:56 tbss_2_reg.e13287.1
> > rwrwr1
> > giuliani giuliani 14442064 May 2 09:56 target.img
> > rwrwr1
> > giuliani giuliani 348 May 2 09:56 target.hdr
> > rwrwr1
> > giuliani giuliani 108 May 2 09:56 .commands
> > rwrwr1
> > giuliani giuliani 0 May 2 09:56
> > C119_PL_dti_FA_FAi_to_target_nonlinear.msf
> > rwrwr1
> > giuliani giuliani 0 May 2 09:56
> > C117_GB_dti_FA_FAi_to_target_nonlinear.msf
> > drwxrwxrx
> > 3 giuliani giuliani 4096 May 2 09:56 .
> > [giuliani@localhost FAi]$
> >
> >
> >
> >
> >
> >
> > <tbss_2_reg.e13287.1><tbss_2_reg.e13287.2>
>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ---------------------------------------------------------------------------
>
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