Hello,
I'm sure the original dataset is not corrupt but instead there's a bug (or
two!) in Analysis that I need to track down. I don't actually have
NmrPipe installed but I'm downloading it now. So perhaps the best option
for now is for you to upload your raw data and NmrPipe scripts to a
computer, and hopefully I can process that on one of our Linux boxes.
I'll send instructions in a separate email.
Wayne
On Fri, 16 May 2008, Andrew Fowler wrote:
> Hi Wayne,
>
> I don't think the original dataset is corrupt, but... I should probably try
> this with a smaller experiment, say an HNCO that's half the size and has
> better effective S/N. I'll post the results of that later, though I expect
> them to be similar.
>
> I'm more than willing to make the data available. If you want processed data
> in NMRPipe and Azara formats, that will run a bit shy of 2 gigs for the
> pair. I can burn it onto a DVD and post it over, ftp or http upload it your
> way, or put it somewhere and let you in via sftp. It will certainly exceed
> any email quotas, but I'm not really concerned about bandwidth.
>
> Another option (still probably too big for email though), if you don't mind
> tying up a CPU and a few gigs of disk for a few hours, is to get you the raw
> Varian data and the NMRPipe scripts I used to process it. That would be more
> like a 20 MB tarball.
>
> Let me know what you'd like me to do. I can also make the Analysis project
> available (with or without 14 MB of xy contour files).
>
> Cheers,
> Andrew
>
> On 5/15/08 5:43 PM, "Wayne Boucher" <[log in to unmask]> wrote:
>
> > Hello,
> >
> > This sounds like it might be worth me trying to debug that data file, but
> > I guess it's so huge that it would mean DVD (i.e. real mail) transfer
> > rather than http to get it over here.
> >
> > The Ansig contours format was changed for Analysis (for one thing to deal
> > with negative contours the same as positive). So the two are incompatible
> > and we definitely haven't tried to allow the old contour files to be read
> > in.
> >
> > It would be good if we could get to the bottom of this.
> >
> > Wayne
> >
>
>
>
>
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