If you have perl installed, just use this script to convert as many
files as you want once by typing : perl mutala.pl myfile.pdb myfile2.pdb etc
Bottomley, Matthew wrote:
>
> Dear All,
>
> Can anyone recommend a windows/PC-friendly program (website?) to
> convert a PDB file into a poly-Ala model?
>
> Thanks a lot!
>
> Matt
>
> ====================================
> Matthew J. Bottomley, Ph.D.
> Senior Research Biochemist
> IRBM / MRL-Rome
> ====================================
>
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--
Nicolas Soler
Institut de Chimie des Substances Naturelles
91190 Gif-sur-Yvette
tel 33-1-69823764
fax 33-1-69823784
http://perso.nicodam.org/
#!/usr/bin/perl -w
############################################################################################
# Mutala: script mutate each residue in alanine in a pdb file #
# Written by Nicolas Soler #
########################FONCTIONS###########################################################
foreach $fichier (@ARGV) {
open (ENTREE,$fichier);
if (glob "polyala$fichier"){unlink "polyala$fichier"};
open SORTIE, ">>polyala$fichier";
select SORTIE;
while (<ENTREE>){if (/^ATOM.{9}(N |C |O |CA|CB)..(\w{3})/){s/$2/ALA/;print $_}};
print "END";
close ENTREE;
close SORTIE;}
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