Dear All,
This is the error i am getting after running Probtrackx in FSL.Please post
comment on this.....
Regards
Vinay Shukla
NBRC India
[root@image bin]# ./fsl
rm -rf /home/vinay/DTI/DTI.bedpostX
mkdir -p /home/vinay/DTI/DTI.bedpostX
rm -rf /home/vinay/DTI/DTI.bedpostX
mkdir -p /home/vinay/DTI/DTI.bedpostX
rm -rf /home/vinay/DTI/DTI.bedpostX
mkdir -p /home/vinay/DTI/DTI.bedpostX
---------------------------------------------------------------------------
** ERROR (nifti_image_read): failed to find header file for
'/home/vinay/DTI/DTI.bedpostX/nodif_brain_mask'
** ERROR: nifti_image_open(/home/vinay/DTI/DTI.bedpostX/nodif_brain_mask):
bad header info
Error: failed to open file /home/vinay/DTI/DTI.bedpostX/nodif_brain_mask
ERROR: Could not open image /home/vinay/DTI/DTI.bedpostX/nodif_brain_mask
Image Exception : #22 :: Failed to read volume
/home/vinay/DTI/DTI.bedpostX/nodif_brain_mask
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
** ERROR (nifti_image_read): failed to find header file for
'/home/vinay/DTI/DTI.bedpostX/nodif_brain_mask'
** ERROR: nifti_image_open(/home/vinay/DTI/DTI.bedpostX/nodif_brain_mask):
bad header info
Error: failed to open file /home/vinay/DTI/DTI.bedpostX/nodif_brain_mask
ERROR: Could not open image /home/vinay/DTI/DTI.bedpostX/nodif_brain_mask
Image Exception : #22 :: Failed to read volume
/home/vinay/DTI/DTI.bedpostX/nodif_brain_mask
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
while executing
"exec sh -c "echo $cX $cY $cZ | $FSLDIR/bin/std2imgcoord -img $mask -vox - |
awk '{print \$1}'" "
(procedure "mm_to_voxels" line 10)
invoked from within
"mm_to_voxels x y z $probtrack(reference)"
("simple" arm line 11)
invoked from within
"switch $probtrack(mode) {
simple {
set fd [ open "${filebase}_coordinates.txt" w ]
set x $probtrack(x)
set y $probtrack(y)
..."
("probtrackx" arm line 63)
invoked from within
"switch -- $probtrack(tool) {
eddy_current {
global eddy
set errorStr ""
if { $eddy(input) == "" } { set errorStr "You need to specify..."
(procedure "fdt:apply" line 5)
invoked from within
"fdt:apply .fdt keep"
invoked from within
".fdt.apply invoke"
("uplevel" body line 1)
invoked from within
"uplevel #0 [list $w invoke]"
(procedure "tk::ButtonUp" line 22)
invoked from within
"tk::ButtonUp .fdt.apply"
(command bound to event)
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