Thanks, I was stuck on fslroi, where that specification is not necessary. Stefano
-----Original Message-----
From: Tim Behrens [mailto:[log in to unmask]]
Sent: Wed 5/14/2008 10:48 AM
To: [log in to unmask]
Subject: Re: [FSL] fslmaths -roi syntax
you need to include the 4th dimension.
If you only have 1 volume, you need
0 182 112 218 0 182 0 1
cheers
T
On 14 May 2008, at 15:42, Marenco, Stefano (NIH/NIMH) [E] wrote:
> I am trying to figure out the proper syntax for the -roi option in
> fslmaths.
> I tried:
>
> fslmaths JHU_bilatATR5% -roi 0 182 112 218 0 182 JHU_bilatATR5%_maths
>
> but got a segmentation fault.
>
> Then I tried:
>
> fslmaths JHU_bilatATR5% -roi < 0 > < 182 > < 112 > <218 > < 0 > <
> 182 > JHU_bilatATR5%_maths
>
> and got an error message: "Missing name for redirect."
>
> Sorry to ask this silly question, but it's not very straightforward
> from the documentation available how these commands should be written.
>
> Stefano Marenco, NIMH
>
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