Hi - maybe these didn't complete properly during the registration. If
you can identify the problem subjects, then remove their .msf files
and re-run tbss_2
Cheers.
On 19 May 2008, at 18:07, Anastasia Ford wrote:
> Hello FSLexperts,
>
> I am having some trouble running the tbss_3_postreg script. I used
> one of
> the subjects in the study as the target for the tbss_2_reg script.
> However,
> when I run the tbss_3 I get the following error message:
>
>
> using pre-chosen target for registration
> affine-registering target to MNI152 space
> transforming (and upsampling) all FA images into MNI152 space
> CON_s03-2.FA_FAi
> ** ERROR (nifti_image_read): failed to find header file for
> 'CON_s03-2.FA_FAi_to_target_nonlinear'
> ** ERROR: nifti_image_open(CON_s03-2.FA_FAi_to_target_nonlinear):
> bad header
> info
> Error: failed to open file CON_s03-2.FA_FAi_to_target_nonlinear
> ERROR: Could not open image CON_s03-2.FA_FAi_to_target_nonlinear
>
> The files that could not be opened are located in the TBSS directory
> and
> were created by the tbss_2_reg script.
>
> Thank you,
>
> Sincerely,
> Anastasia
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
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