Dear list
I apologize for repeated posting, I got unfortunately no solution.
Maybe somebody does have a tip for this problem.
The main fact is that I get after running TBSS and randomise for all
contrasts empty vox images. Mat and con text as the randomise command
line is included.
would be very grateful for every help.
sincerely your
Sergiu
randomise -i all_FA(_skeletonise) -o xx -m <mask> -d *.mat -t *.con -n
5000 -g *.grp
.con:
/ContrastName1 A
/ContrastName2 B
/ContrastName3 C
/ContrastName4 PE-
/ContrastName5 PE+
/ContrastName6 P+E-
/ContrastName7 P-E+
/ContrastName8 P-E-
/ContrastName9 D
/NumWaves 3
/NumContrasts 9
/PPheights 1.000000e+00 1.000000e+00
1.000000e+00 1.000000e+00 1.000000e+00
1.000000e+00 1.000000e+00 1.000000e+00
1.000000e+00
/RequiredEffect 1.518 1.294 0.915 1.995
1.773 1.995 1.585 1.773 1.585
/Matrix
> 1.000000e+00 0.000000e+00 0.000000e+00
> 0.000000e+00 1.000000e+00 0.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 1.000000e+00 -1.000000e+00 0.000000e+00
> 1.000000e+00 0.000000e+00 -1.000000e+00
> -1.000000e+00 1.000000e+00 0.000000e+00
> 0.000000e+00 1.000000e+00 -1.000000e+00
> -1.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 -1.000000e+00 1.000000e+00
>
>
> .mat:
> /NumWaves 3
> /NumPoints 41
> /PPheights 1.000000e+00 1.000000e+00
> 1.000000e+00
>
> /Matrix
> 1.000000e+00 0.000000e+00 0.000000e+00
> 0.000000e+00 1.000000e+00 0.000000e+00
> 1.000000e+00 0.000000e+00 0.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 1.000000e+00 0.000000e+00
> 1.000000e+00 0.000000e+00 0.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 1.000000e+00 0.000000e+00 0.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 1.000000e+00 0.000000e+00 0.000000e+00
> 0.000000e+00 1.000000e+00 0.000000e+00
> 1.000000e+00 0.000000e+00 0.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 1.000000e+00 0.000000e+00
> 0.000000e+00 1.000000e+00 0.000000e+00
> 0.000000e+00 1.000000e+00 0.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 1.000000e+00 0.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 1.000000e+00 0.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 1.000000e+00 0.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 1.000000e+00 0.000000e+00
> 1.000000e+00 0.000000e+00 0.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 1.000000e+00 0.000000e+00
> 1.000000e+00 0.000000e+00 0.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
> 0.000000e+00 0.000000e+00 1.000000e+00
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