Maybe it is point 4 (GFORTRAN_UNBUFFERED_ALL) in
http://www.ccp4.ac.uk/problems.php#6.0-ccp4i
Clemens
On Thu, Apr 24, 2008 at 04:40:14PM -0400, hari jayaram wrote:
> Hello everyone,
> It seems that the reason I get "short summaries" in scala is because the
> "Show Summary button" is affected by a possible intermitently appearing
> change in scala log file formatting.
>
> When I looked for the text "Summary" in the log file I did find the entire
> table -intact.
>
> SO just for completeness - here is what the "Show summary" gave . And below
> this I have the intact summary in the log file. It seems like ccp4i "Show
> summary" button for scala log file viewing does not include the entire table
> in the window everytime.
>
> ================================================================================
>
> Summary data for Project: cy Crystal: P10_2 Dataset: P10_2
>
> Overall InnerShell OuterShell
>
> Low resolution limit 102.06 102.06 2.11
> High resolution limit 2.00 6.34 2.00
>
> Rmerge 0.252 0.112 5.247
> Rmeas (within I+/I-) 0.269 0.118 6.982
> Scala: ** Normal termination **
> Times: User: 403.8s System: 7.8s Elapsed: 6:52
> </pre>
> </html>
>
> ###############################################################
>
> INTACT summary:
> When I do Full log file view : I get the entire summary
>
> ================================================================================
>
> Summary data for Project: cy Crystal: P10_2 Dataset: P10_2
>
> Overall InnerShell OuterShell
>
> Low resolution limit 102.06 102.06 2.11
> High resolution limit 2.00 6.34 2.00
>
> Rmerge 0.252 0.112 5.247
> Rmeas (within I+/I-) 0.269 0.118 6.982
> Scala: ** Normal termination **
> Times: User: 403.8s System: 7.8s Elapsed: 6:52
> </pre>
> </html>
> Rmeas (all I+ & I-) 0.269 0.118 6.982
> Rpim (within I+/I-) 0.091 0.036 4.552
> Rpim (all I+ & I-) 0.091 0.036 4.552
> Fractional partial bias -0.113 -0.122 -1.163
> Total number of observations 1458009 111004 8307
> Total number unique 212719 9864 4327
> Mean((I)/sd(I)) 6.4 16.6 0.3
> Completeness 67.9 99.6 9.4
> Multiplicity 6.9 11.3 1.9
>
>
> ================================================================================
>
>
> ###############################################################
>
>
> User: hari Run date: 22/ 4/2008 Run time: 16:39:47
> On Tue, Apr 22, 2008 at 4:14 PM, hari jayaram <[log in to unmask]> wrote:
>
> > For some reason scala does not output the same log file for me everytime. I
> > got used to looking at the summary for my scala run, using the Show summary
> > button in ccp4i after picking view log file.
> > In most cases I get a detailed summary. For this particular dataset ,
> > despite not changing any parameters in the GUI I get a very shortened
> > summary.
> > Is it that I clicked some button by mistake, that shortens the log-summary.
> >
> > I am using the latest version of ccp4 6.2.2 and fink installed ccp4 on OSX
> > Leopard.
> > I am reproducing the short and long summary here.
> >
> > Thanks for your help
> > Hari Jayaram
> >
> >
> > BAD Case:
> >
> > Summary data for Project: cy Crystal: P10_2 Dataset: P10_2
> >
> > Overall InnerShell OuterShell
> >
> > Low resolution limit 102.06 102.06 2.11
> > High resolution limit 2.00 6.34 2.00
> >
> > Rmerge 0.252 0.112 5.247
> > Rmeas (within I+/I-) 0.269 0.118 6.982
> > Scala: ** Normal termination **
> > Times: User: 404.5s System: 8.0s Elapsed: 6:53
> > </pre>
> > </html>
> >
> > GOOD case:
> >
> > Summary data for Project: cy Crystal: p10_1 Dataset: p10_1
> >
> > Overall InnerShell OuterShell
> >
> > Low resolution limit 102.60 102.60 2.12
> > High resolution limit 2.01 6.35 2.01
> >
> > Rmerge 0.164 0.053 3.283
> > Rmeas (within I+/I-) 0.183 0.058 4.363
> > Rmeas (all I+ & I-) 0.183 0.058 4.363
> > Rpim (within I+/I-) 0.080 0.021 2.835
> > Rpim (all I+ & I-) 0.080 0.021 2.835
> > Fractional partial bias -0.022 -0.018 -0.072
> > Total number of observations 835420 73666 4479
> > Total number unique 196397 9701 3022
> > Mean((I)/sd(I)) 2.2 4.2 0.2
> > Completeness 64.3 99.8 6.9
> > Multiplicity 4.3 7.6 1.5
> >
> >
> >
> > ================================================================================
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
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*
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