If you just run SSM with the two files I think you will get the
alignment you want? It seems to be able to sort out subunits from a
whole model.
Eleanor
Paul Emsley wrote:
> conancao wrote:
>
>> Dear all:
>>
>> I have problem to supperimpose 2 homologous proteins(only one subunit
>> is homologous) in coot.Could anybody give suggestion either using coot
>> or other easily availabe software to superimpose homologous
>> structures(pdb) and give a finial superimposed pdb or picture. Thank you.
>>
>
> See subsection 4.20 Secondary Structure Matching (SSM)
> <http://www.ysbl.york.ac.uk/%7Eemsley/coot/doc/chapters/user-manual_4.html#SEC86>
> of the Coot User Manual.
>
> http://www.ysbl.york.ac.uk/~emsley/coot/doc/chapters/user-manual_4.html#SEC86
>
> Paul.
>
>
>
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