Hi Tim,
Thanks for the quick response. Here is the output:
#!/bin/sh
#$ -cwd
#$ -q long.q
#$ -S /bin/sh
#$ -V
#$ -N bedpostx
#$ -m a
#$ -o $1.bedpostX/logs -e $1.bedpostX/logs
subjdir=$1
nfibres=$2
fudge=$3
bi=$4
slice=$5
slicezp=`${FSLDIR}/bin/zeropad $slice 4`
${FSLDIR}/bin/xfibres\
--data=$subjdir/data_slice_$slicezp\
--mask=$subjdir/nodif_brain_mask_slice_$slicezp\
-b $subjdir/bvals -r $subjdir/bvecs\
--forcedir --logdir=$subjdir.bedpostX/diff_slices/data_slice_$slicezp\
--fudge=$fudge --nj=5000 --bi=$bi --se=100 --upe=24 --nfibres=$nfibres >
$subjd ir.bedpostX/logs/log$slicezp && echo Done
If this helps, I am running FSL 4.0.0. (original zipped filename:
fsl-4.0.0-centos4_64.tar.gz).
Thanks,
Eric
> Hi Eric - I would think this is not normal unless you happened to
> download FSL very soon after FSL4 was released, when there was an
> error in one of the scripts.
>
> can you run the following
>
> cat $FSLDIR/bin/bedpostx_single_slice.sh
>
> and email the output
>
> T
>
>
> On 5 Mar 2008, at 18:55, Eric Hwang wrote:
>
>> Hi all,
>>
>> I'm new to this so let me know if this is posted in the wrong
>> place. I am
>> currently trying to red FDT's bedpostx on a 51 direction DTI data
>> set. It
>> has taken almost an entire week to even get through half the
>> slices. Is this
>> normal or have I done something wrong?
>>
>> Thanks,
>> Eric Hwang
>>
>
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