Hi - from near the top of your logfile you can see that flame (higher-
level group stats core program) crashed. This is most likely either
because the model, contrasts and/or f-stats were not 'legal', or
something was wrong with the data input to it (corrupted somehow) or
that you didn't have enough RAM available on your computer (in which
case see http://www.fmrib.ox.ac.uk/fslfaq/#general_ram ).
Cheers.
On 29 Feb 2008, at 09:15, Hallvard Røe Evensmoen wrote:
> After running higher level analysis with 3D cope images, we don`t get
> any post-stats output at all. The log for the higher level feat
> results:
> ----------------------------------------------------------------------------
> ----
> Higher level stats
>
> cat ../design.lcon | awk '{ print }' > design.lcon
> /usr/local/fsl/bin/flame --cope=filtered_func_data
> --vc=var_filtered_func_data --dvc=tdof_filtered_func_data --mask=mask
> --ld=stats --dm=design.mat --cs=design.grp --tc=design.con --ols
> --nj=10000 --bi=500 --se=1 --fm --zlt=100000 --zut=100000
> terminate called after throwing an instance of 'std::bad_alloc'
> what(): std::bad_alloc
> /bin/sh: line 1: 32302 Aborted
> /usr/local/fsl/bin/flame --cope=filtered_func_data
> --vc=var_filtered_func_data --dvc=tdof_filtered_func_data --mask=mask
> --ld=stats --dm=design.mat --cs=design.grp --tc=design.con --ols
> --nj=10000 --bi=500 --se=1 --fm --zlt=100000 --zut=100000
> Log directory is: stats
> Setting up:
> ntptsing=12.000000
> 6.000000
>
> No f contrasts
> nevs=2
> ntpts=18
> ngs=2
> nvoxels=1424932
> Running:
> nmaskvoxels=0
> njumps = 10000
> burnin = 500
> sampleevery = 1
> nsamples = 9500
>
> Metropolis Hasting Sampling
> Number of voxels=0
> Percentage done:
>
> Saving results
>
> /bin/rm -f stats/zem* stats/zols* stats/mask* ; /bin/mv dof stats
> ----------------------------------------------------------------------------
> Post-stats
>
> Rendering using zmin=2.3 zmax=8
> couldn't open "tmpreport_poststats.html": no such file or directory
> while executing
> "open tmp${pagename} r "
> (procedure "feat5:report_insert_stop" line 4)
> invoked from within
> "feat5:report_insert_stop report_poststats.html poststatspics"
> (procedure "feat5:proc_poststats" line 384)
> invoked from within
> "feat5:proc_poststats $RERUNNING $STDSPACE "
> ("-poststats" arm line 6)
> invoked from within
> "switch -- [ lindex $argv $argindex ] {
>
> -I {
> incr argindex 1
> set session [ lindex $argv $argindex ]
> }
>
> -D {
> incr argindex 1
> set..."
> ("for" body line 2)
> invoked from within
> "for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
> switch -- [ lindex $argv $argindex ] {
>
> -I {
> incr argindex 1
> set ses..."
> (file "/usr/local/fsl/bin/feat" line 137)
> ----------------------------------------------------------------------------
> Using the same data on similar analysis has worked just fine until
> now.
> (the only thinc that was non standard, was the cluster threshold
> being set
> to z=1.7)
>
>
> Hallvard Røe Evensmoen
>
---------------------------------------------------------------------------
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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