Hi Matt,
I added this piece of the puzzle.
"I followed up by running fslinfo on all of the
files in my subjects directory. I noticed that my nodif_brain.nii.gz is
FLOAT 32 while the nodif_brain_mask.nii.gz is INT16. Also all of the files
produced after DTIfit are FLOAT32 (i.e. dti_FA, dti_L1, dti_L2....)
Let me know what you think. I believe that BET is producing
nodif_brain.nii.gz and the mask."
Does this mean that nodif_brain.nii.gz is my problem or is it my data set in
general? What would be the next step for me?
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