I am trying to do tractography on monkey brains using FSL studio. I
obtained my images in minc, did some preprocessing, and registered them in
minc. I checked visually to make sure the the structural was well
registered with the diffusion images in a minc based software. I
subsequently converted the files into proper nifti files. Following this
converison, my files were no longer registered properly... I am not too
sure what kind of fix there is available for this error.
Moreover, I tried registering the images using FSL's Bet extraction and
then the "registeration" program. The files after the registration were
not well registered. What should I do?
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