I have a perl script to do this. It creates a pymol script and runs pymol to generate the view you are looking for.
Thanks
Abhinav
Stanford Synchrotron Radiation Laboratory
Joint Center for Structural Genomics
Mail Stop 99
Phone: (650) 926-2992
Fax: (650) 926-3292
-----Original Message-----
From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of Sandra Dias
Sent: Friday, March 28, 2008 9:15 AM
To: [log in to unmask]
Subject: [ccp4bb] program to draw 2D image of a peptide
Does anyone know of a program, different from Ligplot, that can draw 2D
image of peptides out a pdb file? It would be a plus if it can establish
and draw contacts between this peptide and the neighbors residues.
thanks in advance for any input.
Sandra
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