Well, I don't know then. Did you get the installation script to generate
the 'bin' directory? If so, what scripts does it contain (I listed the
ones in mine in my last message)
Patrick
Murali Vadivelu wrote:
> Thanks for your clarifications.
>
> I see the source has not changed since at least Nov 2007:
> $ md5sum /sw/src/analysis1.0.15.tar.gz
> b713a3ecec90fc74e730eb2db04191b4 /sw/src/analysis1.0.15.tar.gz
> $ md5sum /Users/muralikv/Desktop/analysis1.0.15.tar.gz
> b713a3ecec90fc74e730eb2db04191b4
> /Users/muralikv/Desktop/analysis1.0.15.tar.gz
>
> I am wondering where and how it has been added. Was there some
> instruction posted in the list or online to create those files like we
> do for 'analysis' and co during installation?
>
> On 24 Mar 2008, at 14:39, Patrick van der Wel wrote:
>
>> These programs were added in a somewhat recent version. They should
>> be located in the CCPNMR bin directory
>> (~/research/software/ccpnmr/bin for me), which contains:
>>
>> analysis datashifter dataShifter formatConverter pipe2azara
>> updateAll updateCheck
>>
>> I think it might be possible that if you installed Analysis a long
>> time ago and have always been updating it, that it might not have
>> installed these shell scripts.
>>
>> Patrick
>>
>> Murali Vadivelu wrote:
>>> There is no such file (bin) that seems to be created or are there
>>> any instructions in the INSTALL file for creating such as file, as
>>> is the case for analysis/formatConverter/pipe2azara.
>>>
>>>
>>> On 24 Mar 2008, at 13:33, Patrick van der Wel wrote:
>>>
>>>> No, those commands should work from the shell command line, not
>>>> from within python.
>>>>
>>>> Patrick
>>>>
>>>> Murali Vadivelu wrote:
>>>>> It looks like I need to import some modules before that would work
>>>>> within the python command line.
>>>>>
>>>>> ---------------------
>>>>> im F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne
>>>>> Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides
>>>>> and Ernest D. Laue (2005). The CCPN Data Model for NMR Spectroscopy:
>>>>> Development of a Software Pipeline. Proteins 59, 687 - 696.
>>>>>
>>>>> The FAQ is at:
>>>>> http://www.ccpn.ac.uk/ccpn/software/ccpnmr-analysis/faq
>>>>> For further help see the mailing list:
>>>>> http://www.jiscmail.ac.uk/ccpnmr
>>>>>
>>>>> >>> updateAll
>>>>> Traceback (most recent call last):
>>>>> File "<stdin>", line 1, in <module>
>>>>> NameError: name 'updateAll' is not defined
>>>>> >>> updateCheck
>>>>> Traceback (most recent call last):
>>>>> File "<stdin>", line 1, in <module>
>>>>> NameError: name 'updateCheck' is not defined
>>>>> ----------------------------------
>>>>>
>>>>> Ideally, I am looking for a command that I can run from the
>>>>> regular command line.
>>>>>
>>>>> On 24 Mar 2008, at 13:11, Patrick van der Wel wrote:
>>>>>
>>>>>> You should be able to use either the command 'updateCheck' or
>>>>>> 'updateAll', which check for updates interactively or just apply
>>>>>> all current updates, respectively.
>>>>>>
>>>>>> Patrick
>>>>>>
>>>>>> Murali Vadivelu wrote:
>>>>>>> Dear Developers,
>>>>>>>
>>>>>>> Is there a way to run the 'Upgrade' menu function from the
>>>>>>> command line without running the GUI (analysis GUI; Project >
>>>>>>> Upgrade).
>>>>>>>
>>>>>>> Many thanks.
>>>>>>>
>>>>>>> Best,
>>>>>>> M.
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