I see! Thanks Patrick and Dan.
I checked the installCode.py file. Unfortunately, the Readme/Install
file is not up to date. Since the installcode.py would not be suitable
for Fink packaging (similar to Debian packaging), Fink follows the
manual instructions to create the package, based on your Install doc
file in the tar ball.
I will fix Fink accordingly. Thanks again.
On 24 Mar 2008, at 18:40, Daniel O'Donovan wrote:
> Murali,
>
> If you *install* from the most recent analysis tar ball as per the
> INSTALL instructions (you do this by running python installCode.py
> analysis)
>
> then the appropriate update scripts will be created in the bin
> directory, assuming you reply 'yes' at the create bin directory
> prompt.
>
> Simply unzipping the code over a previous install does not create
> any new bin scripts, it simply copies the new code over the old code.
>
> Dan
>
> PS The most recent analysis tar ball is 1.0.15 and your md5 sums
> tally with mine.
>
> On 24 Mar 2008, at 18:27, Murali Vadivelu wrote:
>> Thanks for your clarifications.
>>
>> I see the source has not changed since at least Nov 2007:
>> $ md5sum /sw/src/analysis1.0.15.tar.gz
>> b713a3ecec90fc74e730eb2db04191b4 /sw/src/analysis1.0.15.tar.gz
>> $ md5sum /Users/muralikv/Desktop/analysis1.0.15.tar.gz
>> b713a3ecec90fc74e730eb2db04191b4 /Users/muralikv/Desktop/
>> analysis1.0.15.tar.gz
>>
>> I am wondering where and how it has been added. Was there some
>> instruction posted in the list or online to create those files like
>> we do for 'analysis' and co during installation?
>>
>> On 24 Mar 2008, at 14:39, Patrick van der Wel wrote:
>>
>>> These programs were added in a somewhat recent version. They
>>> should be located in the CCPNMR bin directory (~/research/software/
>>> ccpnmr/bin for me), which contains:
>>>
>>> analysis datashifter dataShifter formatConverter pipe2azara
>>> updateAll updateCheck
>>>
>>> I think it might be possible that if you installed Analysis a long
>>> time ago and have always been updating it, that it might not have
>>> installed these shell scripts.
>>>
>>> Patrick
>>>
>>> Murali Vadivelu wrote:
>>>> There is no such file (bin) that seems to be created or are there
>>>> any instructions in the INSTALL file for creating such as file,
>>>> as is the case for analysis/formatConverter/pipe2azara.
>>>>
>>>>
>>>> On 24 Mar 2008, at 13:33, Patrick van der Wel wrote:
>>>>
>>>>> No, those commands should work from the shell command line, not
>>>>> from within python.
>>>>>
>>>>> Patrick
>>>>>
>>>>> Murali Vadivelu wrote:
>>>>>> It looks like I need to import some modules before that would
>>>>>> work within the python command line.
>>>>>>
>>>>>> ---------------------
>>>>>> im F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh,
>>>>>> Anne
>>>>>> Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John
>>>>>> Ionides
>>>>>> and Ernest D. Laue (2005). The CCPN Data Model for NMR
>>>>>> Spectroscopy:
>>>>>> Development of a Software Pipeline. Proteins 59, 687 - 696.
>>>>>>
>>>>>> The FAQ is at: http://www.ccpn.ac.uk/ccpn/software/ccpnmr-analysis/faq
>>>>>> For further help see the mailing list: http://www.jiscmail.ac.uk/ccpnmr
>>>>>>
>>>>>> >>> updateAll
>>>>>> Traceback (most recent call last):
>>>>>> File "<stdin>", line 1, in <module>
>>>>>> NameError: name 'updateAll' is not defined
>>>>>> >>> updateCheck
>>>>>> Traceback (most recent call last):
>>>>>> File "<stdin>", line 1, in <module>
>>>>>> NameError: name 'updateCheck' is not defined
>>>>>> ----------------------------------
>>>>>>
>>>>>> Ideally, I am looking for a command that I can run from the
>>>>>> regular command line.
>>>>>>
>>>>>> On 24 Mar 2008, at 13:11, Patrick van der Wel wrote:
>>>>>>
>>>>>>> You should be able to use either the command 'updateCheck' or
>>>>>>> 'updateAll', which check for updates interactively or just
>>>>>>> apply all current updates, respectively.
>>>>>>>
>>>>>>> Patrick
>>>>>>>
>>>>>>> Murali Vadivelu wrote:
>>>>>>>> Dear Developers,
>>>>>>>>
>>>>>>>> Is there a way to run the 'Upgrade' menu function from the
>>>>>>>> command line without running the GUI (analysis GUI; Project >
>>>>>>>> Upgrade).
>>>>>>>>
>>>>>>>> Many thanks.
>>>>>>>>
>>>>>>>> Best,
>>>>>>>> M.
>
> Daniel O'Donovan
> [log in to unmask]
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