Load the brain into FSLView and move the crosshair to the location you think
is the center of the brain and then record the voxel coordinates of the
crosshair.
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Vina Goghari
Sent: Thursday, February 21, 2008 10:49 AM
To: [log in to unmask]
Subject: Re: [FSL] BET
Hi Matt,
What is the best way to find the actual center?
Thanks,
Vina
Matt Glasser wrote:
>You should ensure that the center coordinate (given by the -c <x> <y> <z>
>argument) is correctly located. You can load the image in FSLView and find
>the voxel coordinates that reflect the actual center of the brain. The
>default center will be the voxel coordinates that are loaded by default in
>FSLView.
>
>Peace,
>
>Matt.
>
>-----Original Message-----
>From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
>Of Vina Goghari
>Sent: Tuesday, February 19, 2008 7:54 PM
>To: [log in to unmask]
>Subject: [FSL] BET
>
>Hi,
>I have some extra brainstem that I would like to remove using FSL and am
>not have much luck changing the -f and -g values from the default to do
>it. Any suggestions for that?
>
>Thanks,
>Vina Goghari
>
>
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